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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCGTTGAGCGAGAAAATGAAGCACCTAAGGAACGAGAAGCATCGAGGCTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgttcgcttcctttttctttttcatgcgttattcaaattttcatatgttattcaattgttggtcagcatcattggtggatagctcagagtgcca...

Basic information

species Vitis vinifera
transcript Vv11s0016g03200.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860593|gb|DT009648.1|DT009648
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71862772|gb|DT011827.1|DT011827
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71861743|gb|DT010798.1|DT010798
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71862499|gb|DT011554.1|DT011554
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71861630|gb|DT010685.1|DT010685
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71864491|gb|DT013546.1|DT013546
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71864483|gb|DT013538.1|DT013538
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71863373|gb|DT012428.1|DT012428
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|294965788|gb|GW839243.1|GW839243
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGACGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71865183|gb|DT014238.1|DT014238
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GAGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71864565|gb|DT013620.1|DT013620
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|110690968|gb|EE068534.1|EE068534
EST:     CTACACTCCTGTCCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GAGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|110404543|gb|EC969762.1|EC969762
EST:     CTACACTCCTGTCCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GAGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
EST: gi|71863525|gb|DT012580.1|DT012580
EST:     CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATG                         GAGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC
genomic: CTACACTCCTGTTCTCGACGAAGTTCTAGATCCTGAAAATCAAGTGAATGgttggttgtt ... ctggttgtagGGGATTACAAGGAGGGATATTATATTGGTGTTGAAGTGCCCGAACATGATC