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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGTGGGCAAGTAGCAAACGATGATTGGCAAGGAAGCACAGACGCCCCAGTTTACAGGGTTGGACCAGGACCAGCAATTCTGAATCTCAGTTACACTgtaagtacaaaagtattgaactgggtaaggtagggtattgttagctcatcttaataatccgtggcttcagctccactagtctatcagtggaagtggaagtggaagagaacaggcaaataatgaaatcggtttttgggtgggatttcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03010.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G01000.1 (Glycine max), 5'ss of exon 1
AATTGGTGGGCAAGTAGCAAACGATGATTGGCAAGGAAGCACAGACGCCCCAGTTTACAGGGTTGGACCAGGACCAGCAATTCTGAATCTCAGTTACACTgtaagtacaaaagtattgaactgggtaaggtagggtattgtt-agctcatcttaata-atccgtggcttcagctccactagtctatcagtggaagtggaagtggaagagaacaggcaaataatgaaatcggtttttgggtgggatttcag
||||||||| | ||| ||  | ||||||||||| |||||||  || |||||  |||||||| ||||||||||||||| |||||| || || |||||||  |||    ||    | ||   ||   |  |  |   | || || || | |  |   |  ||  |    |  |             ||   | || ||   |                                                  
AATTGGTGGACCAGTTGCTGAGGATGATTGGCAGGGAAGCAAGGATGCCCCTATTTACAGGCTTGGACCAGGACCAGGAATTCTCAACCTTAGTTACAAGgtattgccatctatctttgtctaattgtgccaactttttttttagatgaattcggtgtatgtgctaatggaaagttggagactaatgtcttgaggtatta--------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161710708|gb|FC060286.1|FC060286
EST:     CAGTTTACAGGGTTGGACCAGGACCAGCAATTCTGAATCTCAGTTACACT                         GGTGAGCAAAAAATAACCACAATCCAGAATGTGTTTGGTGTGATCGAAGGA
genomic: CAGTTTACAGGGTTGGACCAGGACCAGCAATTCTGAATCTCAGTTACACTgtaagtacaa ... gggatttcagGGTGAGCAAAAAATAACCACAATCCAGAATGTGTTTGGTGTGATCGAAGGA