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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGGGTTTAATTCCAGGGAATCGGCCATGTTTACCCGAATTTTCGGCAAGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtctgatttgaattttgtaatttattatatttgattcaatgagtttacgtggggttattgggatttggagtgttctttgcgtttaattcattg...

Basic information

species Vitis vinifera
transcript Vv11s0016g02720.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110722835|gb|EE099457.1|EE099457
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|161713293|gb|FC064023.1|FC064023
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110708697|gb|EE086538.1|EE086538
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110403081|gb|EC964214.1|EC964214
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|71862349|gb|DT011404.1|DT011404
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110698452|gb|EE075966.1|EE075966
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110703669|gb|EE080715.1|EE080715
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110390768|gb|EC955695.1|EC955695
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|294966068|gb|GW837435.1|GW837435
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|33409192|gb|CF214819.1|CF214819
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGNNNNNNNGAGAAAGTACTTCTAAAGAAAGCTGC
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAG-AAAAAAGAGAAAGTACTTCTAAAGAAAGCTGC
EST: gi|110688790|gb|EE067742.1|EE067742
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110712254|gb|EE089663.1|EE089663
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|71856497|gb|DT005552.1|DT005552
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|161714334|gb|FC062635.1|FC062635
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|30135641|gb|CB920979.1|CB920979
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110686195|gb|EE063577.1|EE063577
EST:     AGCCTAATCAGGCAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110387426|gb|EC952089.1|EC952089
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|71864805|gb|DT013860.1|DT013860
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|351033312|gb|FQ446544.1|FQ446544
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110711775|gb|EE088640.1|EE088640
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110710351|gb|EE086609.1|EE086609
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110711720|gb|EE088521.1|EE088521
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110726442|gb|EE102225.1|EE102225
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110374221|gb|EC938853.1|EC938853
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|349812246|gb|FQ411841.1|FQ411841
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|351034002|gb|FQ447919.1|FQ447919
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|351046232|gb|FQ442610.1|FQ442610
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
EST: gi|110389896|gb|EC954769.1|EC954769
EST:     AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAG                         ACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT
genomic: AGCCTAAGCAGGAAGCCAATGCTTTAACAACGTTGGACAAATTAAACGAGgtttgttgtc ... tattatatagACACTTGAAATGCTAGAGAAAAAAGAGAAAGTACTTCTAAAGAAAGCTGCT