Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384852|gb|EC949317.1|EC949317EST: GACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATG GTTGGGAATAGCAACATGGCTGGTCATCATGTATACAGTTTTCGTCCCAAA
genomic: GACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATGgtacatgact ... aacatggtagGTTGGGAATAGCAACATGGCTGGTCAACATGTATACAGTTTTTGTCCCAAA
EST:
gi|161716649|gb|FC067471.1|FC067471EST: GACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATG GTTGGGAATAGCAACATGGCTGGTCATCATGTATACAGTTTTCGTCCCAAA
genomic: GACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATGgtacatgact ... aacatggtagGTTGGGAATAGCAACATGGCTGGTCAACATGTATACAGTTTTTGTCCCAAA
EST:
gi|30124916|gb|CB910255.1|CB910255EST: GACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATG GTTGGGAATAGCAACATGGCTGGTCATCATGTATACAGTTTTCGTCCCAAA
genomic: GACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATGgtacatgact ... aacatggtagGTTGGGAATAGCAACATGGCTGGTCAACATGTATACAGTTTTTGTCCCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAAGAACTCCAACCCAAGTGGCCAGCCATGCTCAGAAGTATTTTCTCCGACAGGCGACCCTCAGCAAGAAGAAGCGGCGTTCAAGCCTCTTCGACATGgtacatgactctgcctaatttaatttcacttcctgtttgattctcatattcatagttaatgaatcattcatttgattttcacattcttcctctcctgaacatggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC