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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCTGGAGTGGACAAGTTGGAGGAAGGAGAAGAGCTTCAGTGTGACCCCTCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtcacatggactacattattccgtatttaatttgattgttttttttttttttttttcataatttaatttccttttccctttacag

Basic information

species Vitis vinifera
transcript Vv11s0016g02270.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G28040.2 (Glycine max), 5'ss of exon 3
AGCCTGGAGTGGACAAGTTGGAGGAAGGAGAAGAGCTTCAGTGTGACCCCTCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtca-catggactacattattccgtattta--atttgattgttttttttttttttttttc-----ataatttaatttccttttccctttacag-----
| || || ||||| |||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||  |||||||||| |||||||||| |   |||  |   | || ||  ||  ||   ||||| ||  | ||||| | |||   ||     | |    ||           ||||         
AACCGGGTGTGGATAAGTTGGAGGAAGGTGAAGAGCTTCAGTGTGATCCTTCTGCTTACAATTCTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAGgtattttcattcatggcctttttttgttcttgtcatttgttttctgtttttctatttggctccacagaaagaggaaagagaacaaaactttgagcttttt

upper sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G11020.1 (Glycine max), 5'ss of exon 3
AGCCTGGAGTGGACAAGTTGGAGGAAGGAGAAGAGCTTCAGTGTGACCCCTCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgt---cacatggactacattattccgtattta-atttgattgtttttttttttttt---ttttcataatttaatttc--cttttccctttacag----
| || || ||||| ||||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||||||  |||||||||| |||||||||| |   ||      |  | || || | | || | ||||| || ||  |||| | |||   |   ||  |    |      ||||   ||||        
AACCGGGCGTGGATAAGTTAGAGGAAGGTGAAGAGCTTCAGTGTGATCCTTCTGCTTACAATTCTCTTCATGCCTTTCACATTGGATGGCCATGTTTGAGgtatttgcattcatgcctctttttttctttttgacatttgttttttgcttttctatttggctccccaggaagagaacaaaactttgagctttttgataaa

upper sequence: Vv11s0016g02270.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 5'ss of exon 2
AGCCTGGAGTGGACAAGTTGGAGGAAGGAGAAGAGCTTCAGTGTGACCCCTCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtcacatggactacattattccgtat-ttaatttgattgttttttttttttttttttcataatttaa--------tttccttttccctttacag----
| || || || || |   | || || |||||||| |||||||||||||| ||||| || |||||||| || | ||| |||||||| ||||| ||| ||||||   |      ||||     | | | | || ||     ||      |     ||     |||||| ||         ||| | ||   ||  ||     
AACCAGGTGTTGATACCCTTGAAGATGGAGAAGAACTTCAGTGTGACCCTTCTGCTTATAATTCTCTCCATGGCTTCCATGTTGGTTGGCCCTGTCTGAGgtaatatcatttctactcctatacatgtgttcatgaagctgaaagcgtgagacttaagggataattcaaatgagaagcttcttctttgtttgtcaacagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351027106|gb|FQ439967.1|FQ439967
EST:     TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAG                         CTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA
genomic: TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtcacatg ... ccctttacagCTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA
EST: gi|351017861|gb|FQ436214.1|FQ436214
EST:     TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAG                         CTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA
genomic: TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtcacatg ... ccctttacagCTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA
EST: gi|351012692|gb|FQ430255.1|FQ430255
EST:     TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAG                         CTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA
genomic: TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtcacatg ... ccctttacagCTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA
EST: gi|349828396|gb|FQ417138.1|FQ417138
EST:     TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAG                         CTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA
genomic: TCTGCCTACAATTCTCTTCACGCCTTTCATGTTGGATGGCCTTGTTTGAGgtgtcacatg ... ccctttacagCTTTGATATTGTGCGCGATTCCTTGGGACTGGTGCGCTCTGAATTTCCCCA