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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAGgtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g01930.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G16560.1 (Glycine max), 5'ss of exon 2
AGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAGgtttgtcaccctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagct-gactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcag
||||| ||||| ||||||||||||||||||||||| ||||| ||||| || ||||| || |||||||||||| | ||||||||||  |  | ||||| |   |   |  || ||  || |      ||    |  ||| ||  |||     |||| |||| |  | | |  | ||    |    |||||    ||    ||   ||||  |                                                     
AGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAGgttttgcctcttccatgtttaattgtgcattcacctgcaacaattttctgttctttttatttatga---ccttgattttgacggttcgggttttgttgtctgctttaatgagtgttttatttgttctgcag----------------------------------------------------

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 2
AGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAGgtttgtcaccctccat-ctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagct-gactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcag
||||| ||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| || |||||||||||| | ||||||||||  |  | |||||  | | |   |  || ||  || |      ||||| |  ||| ||  |||    ||||| |||| |  | |    | |||   |    |||||    ||    ||   ||||  |                                                     
AGTCACGCGGGCCTCTTCAACCTTTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAGgttttgcttcttccatgtttaaattgtacattcacctgcaacaatttttctgttcttttatttatgg---tcttgattttgacggttcaggttttattgtctgctttaatgagtgttttatttgttctgcag----------------------------------------------------

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 2
AGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAGgtttgtcac-cctccatctaatac---gatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcag
|||||||| || || ||||| ||||| |||||||||||||| || || |||||| | ||||||||||||||| | ||||||||||| | | | ||| |||| |       || |||| |    ||   |||||| | | ||  ||||||| |||| |   | | |  |||||  | |||| |||  | | |    |   ||  | || | ||  |                                                    
AGTCATGCAGGACTGTTCAATCTCTGCATAGTAGTGCTTGTTGCCGTGAACAGCAGACTTATCATTGAGAATTTAATGAAGgtttgcccctcttccctctatttttcatgtctatcctgcaaaatttggatttcca-acttgtatgcatgcatttatc--tgtgtgcagctg--ttttaacttttttgtcatcggtgtgcat-ttatgttttgcag---------------------------------------------------

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAGgtttgtcac--cctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcag
|| ||||| ||  | |||||||||||| ||||||| ||| | |||||||||||  | || ||||| || |||||||||||||||||      | |   |||  |   |  |||  | |||  ||   |||| |   |    | | ||   ||| |||||  | ||   | |                                                                                              
AGCCATGCCGGATTATTCAACCTCTGTGTAGTAGTTCTTATTGCTGTAAACAGTAGACTCATCATCGAAAATCTTATGAAGgtttgctgttacttgtttctccttttaggaattgaattgcttgaaaatttatcaga---gacgaataactttgttgttgct-atcattcatgtag-----------------------------------------------------------------------------------------