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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTACCTTAAGGTAAACTTTAACTCCTTGGATGTTAAATATGTTCTTGTTGTCTTCGGAGgttggtttcttagttgttttttgagatcatcttgataaaaaaatataatcactacactctgatgtgctgcctacttttcag

Basic information

species Vitis vinifera
transcript Vv11s0016g01590.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01590.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 18
-------------------------------------GTACTACCTTAAGGTAAACTTT-AACTCCTTGGATGTTAAATATGTTCTTGTTGTCTTCGGAGgttggtttcttagttgttttttgagatcatcttgataaaaaaatataatcactacactctgatgtgctgcctacttt-tcag
                                       |   |     || ||| ||| |||||||||||||| |||||||||||||| ||||| || |||  || | |   |  |    |     |||||||   |  |  | | |    ||  |||||||  |      | ||  | ||
CACATTGCAACTGTTGGCACTGCAATGTCATCTCCAGAAAAGGCGGCGTGGGAAATTTTCAACTCCTTGGATGTGAAATATGTTCTTGTCGTCTTTGGTGgtatgtgtttggctcatgacattg--ccatcttgtgtattatctctgaagtatattctctgatcggacaatcatttcattag