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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgattattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttag

Basic information

species Vitis vinifera
transcript Vv11s0016g01380.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G093902_T02 (Zea mays), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgattattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttag
 | ||||| || |||||||||||||| || ||||||||  | || || || |||||||| || ||||||||| | ||||| || |||||||||||||| |||   |      ||   |      |   | || |   |  || |  || | || ||||      |||||  ||   |  |  ||||
CGCGAGCTCGCGGAGGATGGCTACTCCGGCGTCGAGGTCCGCGTCACCCCCATGCGCACCGAGATCATCATCCGTGCCACCCGCACTCAGAACGTTCTCGgtatgtgcgcttctacaagccccgtcccgatcacagctgtgaatacttcggttactgaactgtttttttctctcgatctcgcttag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G21190.1 (Glycine max), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgat-tattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttag---------
|| ||| | |||||||| || ||||| || || || |||||||||||||| |||||||| ||||||||||||||||||||  | || ||   |||||| |||  |    || || || | | |||| || |   |  ||        || | | |   |   |  ||| ||  || |||| | || |         
AGGGAGTTAGCCGAGGACGGATACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAAATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgt--tcgtgtgcctctgttgtgttctagattcttctattttttcccctttggtattgaatattgatttcttttttcttggttatttgtatttatag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G33230.1 (Glycine max), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgattattcttgagttcgcgtt-tcagatttgttggttttctgactctccttttttgctttt-tggcttttag--
 | ||  |||| ||||| || ||||| || ||||| |||||||||||||| |||||||| || |||||||||||||||||  | || ||   |||||| ||||  |   |  ||   |   | | | | || | |   ||  ||||       |||   |     || | || |||| |||  | ||   
CGTGAATTGGCGGAGGACGGTTACTCCGGCGTCGAAGTTAGGGTTACGCCGATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTAGgtgcgtgtgtttctagaaccttccattactttgtggaatcgaatttccattcattcattcataaattgtgtgtttttatggtatatatag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G26890.1 (Glycine max), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgat-tattcttgagt-tcgcgtttcagatttgttggttttctgactctccttttttgc--tttttggcttttag---------------------
|||||| |||||||||| || ||||| || || || |||||||||||||| |||||||| |||||||| || ||||||||  | || ||    ||||| |||  |    || |   | | | |||| || | |    |||    ||| ||     | ||    |   | || |   ||||||| ||||                       
AGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgt--tcgtgtgcccgcgttctgttctggaatcttctatttttctttttttacccctttggaattgaatattggaagtttttggtttttttttggttattttgtattaatag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G26790.1 (Glycine max), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgt-----------------gattcaatggctttgattattcttgagttcgcgtttcagatttg----ttggttttctgactctccttttttgctttttggct-tttag---------
|||||| |||||||||| || ||||| || || || |||||||||||||| |||||||| |||||||| || ||||||||  | || ||    ||||| |||                 | |       |||  ||| |||||   ||  |  ||  || |||    ||||   | |   | |  ||||||  ||||||| | ||| |         
AGAGAGTTGGCCGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAAATCATAATTAGAGCCACCAGAACCCAAGCTGTTCTCGgttcgtgtgcccgtgttctgttctggaatcttctatttttcttattttacccctttggaattgaatattggaagtttttgttttgtttttttttttttggttattttgtattaatag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G28440.1 (Glycine max), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgattattc-ttgagttcgcgtt-tcagattt--gttggttttctgactctcctt-ttttgctttttggcttttag------
 | ||| |||| ||||| || ||||| || || ||||||||||||||||| |||||||| || || ||||||||||||||  | || ||   |||||| ||||  |   |  || | |   | | || | || | |   ||  ||||   ||  |    |   ||      || || | ||| | || ||       
CGTGAGTTGGCGGAGGACGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCGATGCGCACCGAGATTATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGgtgcgtttgtttctgtaaccttccgttaaatttgtgggatcgaattttcattcataaattagttccatgaattgtgttgttttgattgtatatatag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G33240.1 (Glycine max), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtga-------ttcaatggctttgattattctt--gagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttag
 | ||  |||| ||||| || ||||| || || || |||||||||||||| |||||||| || |||||||||||||||||  | || |||   ||||| ||||        |  |    |||  |||| | ||  |   |||  |||| | ||  ||  ||     | | |  | ||||| || |     | |||
CGTGAATTGGCGGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAGGCTGTTCTAGgtgcgtgtgtttctagaaccttccattacttttgtggaatcgaatttcgg-ttcattcattcataaattgtgttgttttgattgt--atatatag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G31610.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgattattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttag
|||||||| || |||||||| ||||||||||| |||||||||||||| |||||| | ||||| || ||||||||||| |||||||||||||| |||||||||   |   |    ||||| |||  |    || | ||  |  ||   ||  ||||    |||  | |      | |||| ||||||
AGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCAATGAGGACTGAGATTATCATCAGAGCTACTCGTACTCAGAATGTTCTTGgtatgtttgt----ttgatcatttctt--ctctctttcgattttgaatgtgtttcgagatctgatatcgaaaatgttgggttttag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G53870.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatggctttgattattcttgagttcgcgtttcagatttgttggttttctgactctccttttttgctttttggcttttag
|||||||| || |||||||| ||||||||||| |||||||||||||| || ||| | ||||| || ||||||||||| || ||||||||||| ||||| |||      |||  ||||||  |||  |  |   | ||||   | |  |    |  ||||| |    |||      |||  ||| ||
AGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGgt------atgtttttgatc-ttcgagcttaatcatttcttctattatacggtagtgactgtaaaatttga----ttgtatttcag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G35530.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaatg-gctttgattattcttgagttcgcgtttcagatttgttggttt-tctgactctccttttttgctttttggctt---ttag
|||||||| || |||||||| ||||||||||| |||||| | || || || ||||| ||||| |||||||| ||||||||||||||||| |||||||| |||   |   ||   |||  |||  ||||   ||   ||  |  ||| || |||| | |||      |||  || || |  | ||   ||||
AGAGAGCTTGCTGAGGATGGTTACTCTGGTGTTGAGGTTCGCGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTTCTCGgtatgttggtgcattttcgttaaccttg--ctctgattcgacctttttttgtttctatgatatcaatttgatgattctctgtttggtttag

upper sequence: Vv11s0016g01380.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EDP07493 (Chlamydomonas reinhardtii), 5'ss of exon 2
AGAGAGCTGGCCGAGGATGGCTACTCTGGTGTCGAGGTTAGGGTTACGCCAATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgatt-caatggctttgattattcttgagttcgcgtttcagat-----ttgttggttttctgactctccttttttgctttttg--gcttttag------
 | ||||||||||||||||||||||| ||||| |||||  | || || || ||||||||||| || |||||| | || ||||| ||||||||||| || |||||   ||  |     |  |      ||| | | | |   |         |  |    | |   || |    |  ||| | ||  ||  || |      
CGCGAGCTGGCCGAGGATGGCTACTCCGGTGTGGAGGTCCGCGTGACCCCCATGCGCACTGAGATTATCATCCGCGCTACTCGCACTCAGAACGTGCTGGgtgagcgcagagagcaggcctcggagggagatggggctcttggcagccgccgcggtgcctgtacatcactcgctgagctatgtgcagcgctttgtgactg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33402276|gb|CF207903.1|CF207903
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|351015000|gb|FQ444289.1|FQ444289
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|26262026|gb|CA813089.1|CA813089
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAGAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|26261974|gb|CA813037.1|CA813037
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|349832316|gb|FQ420877.1|FQ420877
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|71869842|gb|DT018897.1|DT018897
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|351043060|gb|FQ443902.1|FQ443902
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|110712407|gb|EE089992.1|EE089992
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|37184104|gb|CF603458.1|CF603458
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|26267581|gb|CA818644.1|CA818644
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|351025652|gb|FQ426666.1|FQ426666
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|34546837|gb|CF515069.1|CF515069
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|33402357|gb|CF207984.1|CF207984
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|110389857|gb|EC954729.1|EC954729
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|34546658|gb|CF514890.1|CF514890
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|33402921|gb|CF208548.1|CF208548
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|110684969|gb|EE062852.1|EE062852
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|110687640|gb|EE065280.1|EE065280
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|110360898|gb|EC924341.1|EC924341
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|110425974|gb|EC992370.1|EC992370
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCATTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
EST: gi|37184006|gb|CF603360.1|CF603360
EST:     AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTG                         GTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT
genomic: AATGCGCACTGAAATCATCATCAGAGCCACTCGTACTCAGAACGTTCTTGgtgattcaat ... tggcttttagGTGAGAAAGGGAGGAGAATTAGAGAATTGACGTCCGTTGTACAAAAGCGAT