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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCTTTAATAGgtgaatggtatttatgttatgtaattttgacatcttagaggaagcttaagccacctaagatttttcgtttcaaatgcaaggacacagctctaattgcttttgttggttctccattttttgctcacag

Basic information

species Vitis vinifera
transcript Vv11s0016g00850.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g54020.1 (Oryza sativa), 5'ss of exon 3
TGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCTTTAATAGgtgaatggtatttatgttatgtaattttgacatcttagaggaagcttaagccacctaagatttttcgtttcaaatgcaaggacacagctctaattgcttttgttggttctccattttttgctcacag
|| |||||| | |||||||| ||||| ||||| |||||||| |||||||||||||| || |  ||  |||| ||||| || ||  | |  || || |||||||||| | ||  |        | ||  |  || |      ||   ||    || | | |  | |     || || | |    | ||||    ||| | | ||||       || |  |||| |   
TGCTTTTGTTTGATGCCAACTGGAGGTGGAAAATCAATGTGCTATCAGATTCCTGCTCTAGTGAAGTCAGGCATTGTTCTTGTTATCTCACCCTTGATAGgtgaattg-atccac----caaacttcagttatttccagaaaaaaatag--tacttgacaaatgtg----catatacta----atagcttc--ttgatatggttgaaaa---atctgctgcttag--

upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G08180.1 (Glycine max), 5'ss of exon 2
TGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCTTTAATAGgtgaatggtatttatgttatgtaattttgacatcttagaggaagcttaa-gccacctaagattt---ttcgtttcaaatgcaaggacacagctctaattgcttttgttggttctccattttttgctcacag
||||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||| |||||||| |||| |||||||| || ||||| ||||||||||||||||   |||  | || | ||| |||   | |||      ||||||  ||  | |   | ||   || ||||    ||| ||||||||  | | ||| ||    || ||||  |               
TGTTTTTGTCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATCCCTGCATTGGCAAAAGCAGGCATTGTGCTTGTCGTTTGCCCTTTAATAGgtgaatcacattcttcttttataaattttgtaactttttctgagcttattgctgcttggtaattcacttagttttgtgtgctaggacaca--tgtgatttctgacttttgttcctctgacag---------

upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G35740.2 (Arabidopsis thaliana), 5'ss of exon 2
TGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCTTTAATAGgtgaatggtatttatgttatgtaatt--ttgac-----atcttagaggaagcttaagccacctaagattt--ttcgtttcaaatg-----caaggacacagctctaattgcttttgt-tggttctccattttttgctcacag-----------------------------------------------------------
|| |||||  | |||||||| ||||||||||| || || ||||||||||| |||||| | || ||||| || || || || || || | |||||| || ||| |||  | ||| | ||   | |||  || |      ||||  |       |     | |  | ||| |  || |||||   ||     |||   | ||||| | || |    ||  | || ||    || |||    |                                                             
TGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTGgtaaatc-tgttttttttccctgattcgttaatggagaatctctgttttgattggtctctctaacgatgtgctttgtttctcgtgtttttcaacttctcagctttgatggtaagtgcattgtccttttcttattgtgttcttctcttttaagcttttttttgttaatggtttttgaagaaacgttttttgtttctacttag

upper sequence: Vv11s0016g00850.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G35740.1 (Arabidopsis thaliana), 5'ss of exon 2
TGTTTTTGTCTCATGCCAACAGGAGGAGGAAAGTCAATGTGTTATCAGATTCCTGCACTGGCAAAACCAGGGATTGTGCTCGTGGTTTGTCCTTTAATAGgtgaatggtatttatgttatgtaattttgacatcttagaggaagcttaagccacctaagatttttcgtttcaaatgcaaggacacagctctaattgcttttgttggttctccattttttgctcacag
|| |||||  | |||||||| ||||||||||| || || ||||||||||| |||||| | || ||||| || || || || || || | |||||| || ||| |||        |||| | |     |||    |||  |||   |        ||    |  || || ||   |  || ||    |||    ||| || |  || || || | || |         
TGCTTTTGCTTGATGCCAACGGGAGGAGGAAAATCGATTTGTTATCAGATACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTGgtaaatc-------tgttttttttccctgattcgttaatggagaatc------tctgttttgattggtctc---tctaacgatgt-gct----ttgtttctcgtgtttttcaacttctcag------