1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAGCCACAAGCAGAAGCTTGTTGTCAATTAACCCAGGAGTTCTTTAAAGAAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggactttttgtttaaatactatagatgttgatgttaattcgaattggctgaccatctgttatgggtttttctttacattcacgtactccaaact...
species | Vitis vinifera |
transcript | Vv10s0405g00020.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTEST: gi|110709185|gb|EE084422.1|EE084422
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGT
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|110718449|gb|EE095298.1|EE095298
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|161720393|gb|FC070185.1|FC070185
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|161714917|gb|FC064539.1|FC064539
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|161715770|gb|FC066174.1|FC066174
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|110712226|gb|EE089603.1|EE089603
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|33403466|gb|CF209093.1|CF209093
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|110722059|gb|EE097960.1|EE097960
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|110699863|gb|EE077248.1|EE077248
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|110712662|gb|EE087902.1|EE087902
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTCEST: gi|110696026|gb|EE074715.1|EE074715
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
EST: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAG ACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
genomic: AAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggac ... atttttgcagACCCGCAAAGATGCCACTCAAGTAGTTGCAAATTTGCAAAGGCAACAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCCACAAGCAGAAGCTTGTTGTCAATTAACCCAGGAGTTCTTTAAAGAAAATACACTGCGACTTTTAATCACTTGTCTGCCCAAATTAAACTTGGAGgtacatggactttttgtttaaatactatagatgttgatgttaattcgaattggctgaccatctgttatgggtttttctttacattcacgtactccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG