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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATCTCCCCAAGTGGTGCTCCACAGCCATTTCTTCCTCTTCTTGCTCCTTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggtttacacattattgtggaattgggattctcagagacagttgagttgacaagtgccatcacattttgcaattcttgctgcttctttcttgcag

Basic information

species Vitis vinifera
transcript Vv10s0116g01850.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349813556|gb|FQ413790.1|FQ413790
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349813525|gb|FQ413759.1|FQ413759
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAC
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349809398|gb|FQ411896.1|FQ411896
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349824836|gb|FQ414694.1|FQ414694
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|71857258|gb|DT006313.1|DT006313
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349821376|gb|FQ410997.1|FQ410997
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|71858739|gb|DT007794.1|DT007794
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|37188012|gb|CF607363.1|CF607363
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|351057193|gb|FQ450900.1|FQ450900
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|71858685|gb|DT007740.1|DT007740
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349815046|gb|FQ410269.1|FQ410269
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349820123|gb|FQ404845.1|FQ404845
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
EST: gi|349808867|gb|FQ406717.1|FQ406717
EST:     TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAG                         GACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT
genomic: TTCACCGCTGACACCATTCACAACAAATAGCACTATCCCAAAATTATCAGgtttggttta ... tttcttgcagGACTTTGTAGTTTAAACTTCTCTGCTGGTGAAAGTATGATCAGCATGACAT