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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAACAAGCGCACTCAAATGAAGgtaaggcttctttgtagcatgcattacaggcgctgtatacgtttctctaagattatatgctgtttatttcagccttttggttttgtctcccttttaattttagaagtaagcttatttcaggaaagagagcttggctatgtctctaaccaaactttgtctccatcacag

Basic information

species Vitis vinifera
transcript Vv10s0116g00680.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G00570.1 (Glycine max), 5'ss of exon 2
TCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAACAAGCGCACTCAAATGAAGgtaaggcttctttgtagcatgcattacaggcgctgtatacgtttc--tctaagattatatgctgtttatttcagccttttggttttgtctcc--cttttaattttagaagtaagcttatttcaggaaagagagcttggctatgtctctaaccaaactttgtctccatcacag
||| || ||||| ||||||||||| ||| ||||||||||  | ||||| |||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |        ||   |    ||    | | |||  | ||     |   | |||  | ||  |  ||     ||   |||    | |   | | || |||| |   | |  ||||  | |  | |                                           
TCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGgtaagtcaa----agagagagagagacgaaagttatattagattgaactttgaagtatg-gttgccttgtttgaatttcaagttgcaccactaacatatactttttg---ttaatttatgccggtcatgtag----------------------------------------

upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA01G45070.1 (Glycine max), 5'ss of exon 2
TCATCCAGATGATAAGCAAAGAAAGGAGTTGAGCCGTGAATTAGGGTTGGAGCCTTTACAAGTCAAATTTTGGTTCCAAAACAAGCGCACTCAAATGAAGgtaaggcttctttgtagcatgcattacaggcgctgtat-acgtttctcta-agattatatgctgttta--tttcagccttttggttttgtctcccttttaattttagaagtaagcttatttcaggaaagagagcttggctatgtctctaaccaaactttgtctccatcacag
||| || ||||| ||||||||||| ||| ||||||||||  | ||||| |||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |        ||   |    |  |  | | ||| |  ||   ||   || ||||||   || |  ||  | |  |    | |   ||   | |||||||  |  |      ||                                                      
TCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGgtaagtcaa----agagagagagagagggaagttatattagattgaactgtggagtatatgaatttgaagttgtaccactaacatatatactttttcttaatttatgctggtcatgtag-----------------------------------------------------