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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATTGCTGAGGAGGGCATTGAGAGGAGAACAATATCTGAAGCTGTATAGCTACCACTACTTGATTAATGGATTTGCGGTGTTTGTTACTTCCCAGCAGgtatagtatcagacttgtatttctaaacttcatcatcatcaagtcaatgccatcattaccaagttcggcatactcatcatggtaaatgttggtgctgcac...

Basic information

species Vitis vinifera
transcript Vv10s0092g00170.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G052365_T01 (Zea mays), 5'ss of exon 1
TTCATTGCTGAGGAGGGCATTGAGAGGAGAACAATATCTGAAGCTGTATAGCTACCACTACTTGATTAATGGATTTGCGGTGTTTGTTACTTCCCAGCAGgtatagtatcagacttgtatttctaaacttcatcatcatcaagtcaatgccatcattaccaagttcggcatactcatca-tggtaaatgttggtgctgcac----
 ||| |  ||| |||| |  | || ||||| || ||| | |||||||||||||||| ||||||||||||||| ||||| ||  |  ||||| | | ||||||||  |||   |  | ||||  |    ||  |    |  |     |||  | ||| ||      | |||   |||  | || || || |   |  || |     
ATCACTATTGAAGAGGACTCTAAGGGGAGAGCATTATGTAAAGCTGTATAGCTACCGCTACTTGATTAATGGTTTTGCTGTTGTCATTACTCCTCGGCAGgtatcctatttcatgtatattatttggattagttgataatagacatatgataacatgaca-----ctgcaagttcaaaagtgatatatttactttatggataaaa

upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G30460.1 (Glycine max), 5'ss of exon 2
TTCATTGCTGAGGAGGGCATTGAGAGGAGAACAATATCTGAAGCTGTATAGCTACCACTACTTGATTAATGGATTTGCGGTGTTTGTTACTTCCCAGCAGgt-----atagtatcagacttgtatttctaaacttcatcatcatcaagt----caatgccatcattaccaagttcggcatactcatcatggtaaatgttggtgct-gcac--------------------------------------------------------
 |||||| |||  |  |  || |  || ||  ||||||||||||| |||||||| || |||||||||||||||||||| ||| | |||||    || |||||     || || | |   ||  |  |||  | |   || | ||   ||     |||     | | |     |  |   |   |||    | | || |||||  | | |                                                         
CTCATTGTTGAATAAAGTGTTTAATGGGGAGAAATATCTGAAGCTCTATAGCTATCATTACTTGATTAATGGATTTGCTGTGCTGGTTACCCAACAACAGgtatgctatggttttacttttcaacatcttgattgtgtccttattctgtgaagaaatatgtgcttcattgtttgagttgtttccatttgtgcatattttggtttttgtatttgtgatctggtaaacttcttcaaccaacatgttcttgatttttgaaatcttgaag

upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G13590.1 (Glycine max), 5'ss of exon 2
TTCATTGCTGAGGAGGGCATTGAGAGGAGAACAATATCTGAAGCTGTATAGCTACCACTACTTGATTAATGGATTTGCGGTGTTTGTTACTTCCCAGCAGgtatagtatcagacttgtatttctaaacttcatcatcatcaagtcaatgccatcattaccaagttcggcatactcatcatggtaaatgttggtgctgcac----------------------------------------------------------------------------
 || ||| |||  |  |  || |  || ||  ||||||||||||| ||||||||||| || ||||||||||||||||| ||| | |||||    || ||||||||||||     || || || | || ||  |||  |||  |   ||| | | |||           ||    | |||| ||    |||| | |                                                                                 
CTCGTTGTTGAATAAAGTGTTTAATGGGGAGAAATATCTGAAGCTCTATAGCTACCATTATTTGATTAATGGATTTGCTGTGCTGGTTACCCAACAACAGgtatagtatgg---ttttacttttcaattt--tcaagatcttgattatgtccttattctgtgaagaaacacgtgcttcattgtttgagttgtttccatttgtgcgtagtttggtgtttgtgtctgttttgataaacttcttcaaccaacaagttcttgattttcgaaatattgaag

upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G09850.1 (Glycine max), 5'ss of exon 2
TTCATTGCTGAGGAGGGCATTGAGAGGAGAACAATATCTGAAGCTGTATAGCTACCACTACTTGATTAATGGATTTGCGGTGTTTGTTACTTCCCAGCAGgtatagtatcagacttgtatttctaaacttcatcatcatcaagtcaatgccatca-ttaccaagttcggcatactcatcatggtaaatgttggtgctgcac
||| ||| ||| ||  |  || |  |||||  ||||||||||||| ||||||||||| ||| |||| |||||||| |||||| | |||||    || |||||||   || ||  ||     ||     || |||||  | |    | |   || | ||||   ||   |  |     |  |  |  || ||| || |    
TTCTTTGTTGAAGAAAGTGTTAAATGGAGAGAAATATCTGAAGCTCTATAGCTACCATTACCTGATAAATGGATTCGCGGTGCTGGTTACCCAACAACAGgtatgacattagttttcatcgtcatggttttatcatt-taagaaaattatgattagttacattgtatagtgtgtagttgtttctttatattgatgatttgg