1 5' 3' | 2 5' 3' |
CGATATGATTGCTCTTTCATTCGTGCGCAAGGGCTCGGATCTTGTCCATGTTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAGgtatgtggatcactttcaatgttctgtttcgtagacattgagaaaagaagaaaggagaaaaaaaaaaaaaaaaggactggtgtatgagtttgcacattgc...
species | Vitis vinifera |
transcript | Vv10s0071g01060.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAG GTTGAGAACCAAGAGGGTGTTATCAACTTCGATGAAATATTACGTGAGACTEST: gi|161712166|gb|FC061538.1|FC061538
genomic: TTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAGgtatgtggat ... aaattttcagGTTGAGAACCAAGAGGGTGTTATCAACTTCGATGAAATATTACGTGAGACT
EST: TTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAG GTTGAGAACCAAGAGGGTGTTATCAACTTCGATGAAATATTACGTGAGACTEST: gi|161711988|gb|FC059580.1|FC059580
genomic: TTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAGgtatgtggat ... aaattttcagGTTGAGAACCAAGAGGGTGTTATCAACTTCGATGAAATATTACGTGAGACT
EST: TTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAG GTTGAGAACCAAGAGGGT
genomic: TTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAGgtatgtggat ... aaattttcagGTTGAGAACCAAGAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATATGATTGCTCTTTCATTCGTGCGCAAGGGCTCGGATCTTGTCCATGTTCGTAAGGTGCTCGGATCCCATGCTAAGCGTATACAGTTAATGTCAAAGgtatgtggatcactttcaatgttctgtttcgtagacattgagaaaagaagaaaggagaaaaaaaaaaaaaaaaggactggtgtatgagtttgcacattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa