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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCAATCTTGGTTTCTACTTCCAAATGGAAACTGGGAGCTGGGCAAGATATTGTCTACTTCAGGGACTGAGACTGTTATTTCACTGCCTGAGGGAAAAgtaagtaaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttag

Basic information

species Vitis vinifera
transcript Vv10s0071g00210.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G42180.1 (Glycine max), 5'ss of exon 1
GCTTCAATCTTGGTTTCTACTTCCAAATGGAAACTGGGAGCTGGGCAAGATATTGTCTACTTCAGGGACTGAGACTGTTATTTCACTGCCTGAGGGAAAAgtaagtaaactaatgcaaacttggatgattgattgtatgtcaa---tgaatctgttgtttacctttttattttgcactggtt--ttcaattttag
|||||| |||||||||| |||||||||||| || ||||||||||| |||||| |  | ||||| || | |||  |  | ||||||||||||||  | || || ||  || | |    |  |   | || || | | |  |||    ||  | |  |   ||     |   |   |||  ||      |||| |||
GCTTCAGTCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTGGGGAAGATAATAACAACTTCTGGAAATGAATCCATCATTTCACTGCCTGACAGGAAGgtgagataaattacaatatttctcaggagtggt-gcacttcatttttggctttactaactatgcagtctctccccacctgtgggcctaattatag

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 3
GCTTCAATCTTGGTTTCTACTTCCAAATGGAAACTGGGAGCTGGGCAAGATATTGTCTACTTCAGGGACTGAGACTGTTATTTCACTGCCTGAGGGAAAAgtaag-taaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttag
 ||||| |||||||||| |||||| ||||| || ||||||||||| |||||| |  | ||||| || | |||  || | |||||||||  ||| || || ||||| |||| ||    |    |  |   | |    | | |   |  |     | |  |   |    | |  |  |||   | | || |||
ACTTCAGTCTTGGTTTCAACTTCCGAATGGGAATTGGGAGCTGGGGAAGATAATAACAACTTCTGGAAATGAATCTATCATTTCACTGTTTGACGGGAAGgtaagataaattacaatatttctcaagagtggtgcatttttggctttactaactatgcagtctcccctctccctgtgggcctta-ttatag

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 3
GCTTCAATCTTGGTTTCTACTTCCAAATGGAAACTGGGAGCTGGGCAAGATATTGTCTACTTCAGGGACTGAGACTGTTATTTCACTGCCTGAGGGAAAAgtaagtaaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttag----
 || ||||||||| ||| |||||||||||| ||||||||||| || ||||||||||| |||||||||   ||| ||||||| ||  |||| || ||||||||||||||  |  || |    |            |||      | ||| | |    ||   ||| || |   |||  |||  || || |     
ACTGCAATCTTGGATTCAACTTCCAAATGGTAACTGGGAGCTTGGGAAGATATTGTCAACTTCAGGGGAGGAGTCTGTTATATCTTTGCCCGAAGGAAAAgtaagtaactttttgtatttctaag---------gtagccaggttaatttttgaagta---tttgatctgaaactactttcaaacttgaaacag

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G50360.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTTCAATCTTGGTTTCTACTTCCAAATGGAAACTGGGAGCTGGGCAAGATATTGTCTACTTCAGGGACTGAGACTGTTATTTCACTGCCTGAGGGAAAAgtaagtaaactaatgcaaacttggatgattgattgtatgtcaatgaatctgttgtttacctttttattttgcactggttttcaattttag
 || |||| |||| | | ||||||||| || |||||||||||||| |||||| |||| ||||||||    ||| |||||||     |  ||||||||||||||||| |  |  ||  || ||   ||  ||| ||||    | |        |||||        | | |    |   ||        ||
ACTGCAATTTTGGGTCCAACTTCCAAACGGTAACTGGGAGCTGGGAAAGATAATGTCAACTTCAGGAGAAGAGTCTGTTATCGTGGTAACTGAGGGAAAAgtaagtgattt--tgttaaattccctgggtgaatgtaaactattattgtaagtgtttgatcggaaactatctcttcacttgattcaacag