Sequence
atgc intronic sequence ATGC exonic sequenceTTACTTTACATCGCCTTGCACAAAATAAAAGGTGGAGGCGTTGCCAGCAATGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGgtaagatggattatttttgtgggttctactaaaatgatttaaaattaagtgttgtagttgttgtctatgggtttgtatgcatgaatgtgtcttggtcttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0042g01130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os12g43560.1 (Oryza sativa), 5'ss of exon 3
TTACTTTACATCGCCTTGCACAAAATAAAAGGTGGAGGCGTTGCCAGCAATGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGgtaagatggattatt---tttgtgggttctactaaaatga-----tttaaaattaagtgttgtagttgttgtctatgggtttgtatgcatgaatgtgtcttggtcttt
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TGTCTTTGCATCGGCTAGCACAAAACAATAGGTGGAGGCGTTGTCAGAGATGCCGACGAATGATTGAACTCACACAAGGCTGCTTCCATATGAATTGCTGgtatgttccttttttcagtttggcacacttgctggtatggaatctcgtagactaaaaagaggaatttcttttttaaaaaaataaacaagtacacacagaa--------
upper sequence: Vv10s0042g01130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G02340.1 (Glycine max), 5'ss of exon 2
TTACTTTACATCGCCTTGCACAAAATAAAAGGTGGAGGCGTTGCCAGCAATGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGgtaagatg--gattatttttgtgggttctactaaa-atgatttaaaattaagtgttgtagttgttgtctatgggtttgtatgcatgaatgtgtcttggtcttt
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TTACCTTTCACCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAACGATTGAGCTTACTCAAGGCTGCTACCACATGACATGCTGgtaagatatcaaaaagtgttgactatttttctatttattttattacatggtctactatgaattttat-tatgcagccaaactattatatagaaagtggaac--
upper sequence: Vv10s0042g01130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G13240.1 (Glycine max), 5'ss of exon 2
TTACTTTACATCGCCTTGCACAAAATAAAAGGTGGAGGCGTTGCCAGCAATGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGgtaagatggattatttttgtgggttctactaaaatgatttaaaattaagtgttgtagttgttgtctatgggtttgtatgcatg--aatgtgtcttggtcttt
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TTACCTTGCATCGTCTTGCTCAGAATAAAAGGTGGAAGCGCTGTCAGCAGTGTCGTAGAATGATTGAGCTTACTCAAGGCTGTTACCACATGACATGCTGgtaagataccaaaaagtgttgactatttttatatttatttcattacatagtctaccattgcaaacctgaaatctacttagatagtattcagtcaaagtat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349829983|gb|FQ420243.1|FQ420243EST: TGCCGGAGGATGATTGAGCTCACGCAAGGGTGCTGTCACATGACCTGCTG GTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACA
genomic: TGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGgtaagatgga ... acaactgcagGTGTGGGCATGAGTTCTGCTATTCTTGTGGTGCGGAGTACAGAGACGGACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTACTTTACATCGCCTTGCACAAAATAAAAGGTGGAGGCGTTGCCAGCAATGCCGGAGGATGATTGAGCTCACACAAGGGTGCTATCACATGACCTGCTGgtaagatggattatttttgtgggttctactaaaatgatttaaaattaagtgttgtagttgttgtctatgggtttgtatgcatgaatgtgtcttggtcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaa