Sequence
atgc intronic sequence ATGC exonic sequenceGGGAGGTTATTCACAGGAGCTGCTATTGGCCTACTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTGgtatttacattggatctccaaatgatacactttgatcagaatcactgaagattcttttgtctgcttctcattgatcttttgttttattcctctactatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G43220.1 (Glycine max), 5'ss of exon 2
GGGAGGTTATTCACAGGAGCTGCTATTGGCCTACTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTGgtatttacattggatctccaaatg----atacactttgatcagaatcactgaagattcttttgtctgcttctcattgatcttttgttttattcctctactatga
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GGAAGGTTGTTGACAGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGgtacttcatttgggagtttgaatgttgtatgcattttgttttgctcctctaa----ttctgtatttgatgtgttatagtattacttgtttttcttgtgaggaaa
upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G23670.1 (Glycine max), 5'ss of exon 2
GGGAGGTTATTCACAGGAGCTGCTATTGGCCTACTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTGgtatttacattggatctccaaatgatacactttgatcagaatcactgaagattcttttgtctgcttctcattgatcttttgttttattcctctactatga-
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GGAAGGTTGTTGACGGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGgtacttcatttgggagtttgaatgttgta-tgcatttggtttttcctctaattctgcatttgatgtgttatagtattagtttttaatattaggaagagaaa
upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G23300.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGAGGTTATTCACAGGAGCTGCTATTGGCCTACTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTGgta-tttac---attggatctccaaa-----------tgatacactttg---atcagaatcactgaagat-tcttttgtctgcttctcattgatc-ttttgttttattcctctactatga----------------
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GGAAGGATATTGACAGGAGCTACCATTGGTCTGGCCATAGCTGGAGGAGCTTATGTTAGTACTGCAGATGAAGCAACCTTCTGgtactttacttaataagtgccctgaaacttagtctttttgttctctttgttagttgacattgctaaggctaccttgtagttactttgaggaagtcactttgttttttacctcttacctattttgtgtgttggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71862479|gb|DT011534.1|DT011534EST: CTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTG TGGCTGGCTTTTCTCGGCAACAAAACTTGTGAATCCTTTCTTTGCCCTTCT
genomic: CTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTGgtatttacat ... tttgttgcagTGGCTGGCTTTTCTCGGCAACAAAACTTGTGAATCCTTTCTTTGCCCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGAGGTTATTCACAGGAGCTGCTATTGGCCTACTCATAGCAGGAGGAGCTTATGTGAGTACCGTGGATGAAGCAACTTTCTGgtatttacattggatctccaaatgatacactttgatcagaatcactgaagattcttttgtctgcttctcattgatcttttgttttattcctctactatga
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA