Sequence
atgc intronic sequence ATGC exonic sequenceCACAAATTTTGAAGAGGATACATGGGCAAAGCTTAAGTCAGCTATTAGTGCTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctgattataaacccaacatattgtggttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G27240.1 (Glycine max), 5'ss of exon 2
CACAAATTTTGAAGAGGATACATGGGCAAAGCTTAAGTCAGCTATTAGTGCTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttt---tctgaaatatttataagttgtctatctgattat--aaacccaacatattgtggttag
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CCCAAATTTTGAGGAGGATACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTCTTGAAGCAACCTGTTTCTTGTGACTTGGAGAATCTTTATCAGgt--aatcatggaaa-atctttttattttatcaggtaatgggtttaatttagccctttgaatattcgccacacattagctcattagagttttatgggaactcaat-tcttttccatag
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G10180.1 (Glycine max), 5'ss of exon 2
CACAAATTTTGAAGAGGATACATGGGCAAAGCTTAAGTCAGCTATTAGTGCTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgt--tcattcaac-catatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctgattat--aaacccaacatattgtggttag
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CCCAAATTTTGAGGAGGAAACATGGGCAAAATTGAAGTCAGCTATTGGTGCTATATTTATGAAGCAACCTGTTTCCTGTGACTTGGAGAATCTTTATCAGgtaatcatggaaaacctttttattttattaagta-atgggtttaatttagccctgcgaatattcgtcacac--attagctcattagagttttatgggaactcaat-tcttttccatag
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 2
CACAAATTTTGAAGAGGATACATGGGCAAAGCTTAAGTCAGCTATTAGTGCTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgttcattcaaccata-tatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctg-attataaacccaacatattgtggttag--
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CACAAATTTTGAGGAGGATACATGGGCAAAACTAAAGTCTGCCATTCGTGCTATATTTTTGAAGCAACCTAACTCTTGTGATTTGGAGAAGCTTTATCAGgtaaccatagaaatcctctaattattactatttttctatcatggttgatttaaccctgtgaatatttatcttgcactaacttattggcatttcatggtgaactcataatctccatag
upper sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G29010.1 (Glycine max), 5'ss of exon 2
CACAAATTTTGAAGAGGATACATGGGCAAAGCTTAAGTCAGCTATTAGTGCTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttata----agttgtctatctg-attataaacccaacatattgtggttag-------
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CACAAATTTCGAGGAGGATACATGGGCAAAACTAAAGTCTGCCATTTGTGCTATATTTTTGAAGCAACCTAACTCTTGTGACTTGGAGAAGCTTTATCAGgt--aatcatggaaat-tctctaattattattatttttctaacatgattgatttagccatgtgaatatttatgttgcactagcttattggtatttcatggtgaactcataatctccattccatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352773043|gb|FQ470658.1|FQ470658EST: CTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAG GCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGG
genomic: CTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgttcattcaa ... ttgtggttagGCTGTTAATGATCTCTGCCTCCACAAGATGGGTGGAAATCTCTATCAACGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAAATTTTGAAGAGGATACATGGGCAAAGCTTAAGTCAGCTATTAGTGCTATATTCTTGAAGCAACCTGATCCCTGTGACTTGGAGAAGCTTTATCAGgttcattcaaccatatatatatatatatatatatatatgtatttttatttttcctttttctgaaatatttataagttgtctatctgattataaacccaacatattgtggttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC