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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgattggtaattgggttcaggttttgagttggagttttggtttgatctgaaatag

Basic information

species Vitis vinifera
transcript Vv10s0003g03130.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G03380.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgattggtaattgggttcaggttttgagttggagttttggtttgatctgaaatag-----------------------------------------------------------
| ||||| || ||||| ||  | ||   |||||||||||| ||||||||||||||||| |||||||| || || ||||| || |||||||||||||||||||||||    | |   |    | | |  | |  |  |||||  |  ||| ||| |    ||||  |  | |  || | | ||   |   |||||||  |                                                           
TGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCCACCAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgtttattgtt-catctctatttcaaatgttgtttattcgt--attcgtact--aattcaa-taataaaatgcaatcttttctatttctgaaaacgttggccattaatcactttatagttattattattgacaatgtcaatgttaattgttacag

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G45430.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgattggtaattg----ggttca--ggttttgagttggagttttggtttgatctgaa-atag---------------------------------------------------
| ||||| || ||||| ||  | ||   |||||||||||| ||||||||||||||||| |||||||| || || ||||| || ||||||||||||||||||||||     | |  |  |  |   |   |||  |  | || ||| ||| ||| | |    | ||||    | ||   ||   | |||| | |  |||| | | |                                                    
TGGTGGGAAGGGCTCTTCCTACCGAATCCGATGAGCATCCTAAGATCTACCGCATGAAACTCTGGGCAACTAACGAGGTCCGTGCCAAATCCAAGTTCTGgtatgctt--tcttcttcttcttcttcttttttcaaatgtttttt-attcgtattcgtactgattcaataatattttttttatgatttgttctattctggagacaagacggttgttcactttattgttattattattgataattttaatttttacag

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G10220.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgta-tgtgggatatgataatgat-gtctggatttgtagttattgtttgattggtaattgggttcaggttttgagttggagttttggtttgatctgaaatag-----------------------------------------------------------------------
| || ||||| ||||| ||  ||||    ||| |||| || ||||||||||| |||||||||||||| || || |||||||||||||| |||||||||||||| |||    |    |  |  | || |   ||| | |  ||  ||   ||  |  || |   |  || |||  ||     |||      ||| ||   |                                                                        
TGGTTGGGAGGGCTCTTCCCACGGAAGCAGATCAGCACCCCAAGATCTACCGAATGAAGCTCTGGGCCACCAACGAGGTTCGCGCCAAGTCCAAGTTCTGgtaatgttttgttcctttttattagttttatttttttgagatccttgatttaatgttttgcgccgtgtattgttttcttagtttccagcaatcagattgaattgcctctgttttgaattctagggtttaggggctgtttttataattttgaatttgttttgctttcaattag

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G13270.1 (Glycine max), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagtt---attgtttgat--tggtaattgggttcagg----ttttgagttggagttttggtttgatctgaaatag
 ||| || || ||||| ||  | || |  |||| |||||| ||||||||| | |||||||| ||||| || |||||||| || |||||||||||||||||||||||   |  | |  ||  ||| |   ||||  |      |||| |||   || |  ||   || ||     |||  |  |  ||  ||  ||| || ||      
-TGTTGGAAGGGCTCTTCCCACTGAAACTGATGTGCATCCTAAGATCTACAGGATGAAGCTGTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGtatgtacaaccttaacattctgtttctgtttgatgacggggttgtgtgaaaatgatgctttttttaagagaattttcaacctaaagactt--tttcatttgt-----

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S101_218V6.1 (Physcomitrella patens), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgat--tggtaattgggttcaggttttgagttggagttttggtttgatctgaaatag
| |||||| | || |||||  | |  | | ||||   ||| |||  ||||||||||||  | ||||||||||| || || ||||| ||||||||||| ||||||||         |   | |     || | |||   | || ||  |  ||| |    ||||||  | |  | | |||  | ||      |   |  |||
TGGTGGGGCGGGCCCTCCCAACAGCTACCAATGAAACTCCCAAGGCCTACCGCATGAAATTATGGGCGACGAACGAAGTGCGCGCTAAATCCAAGTTTTGgtatgttcctcgcagttcagtttcagcgagtcgtatcgagtgatttgtgctggaaggccggttcatttctctactaggacctctgaagaagtgc-atttag

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatg-tgggatatgataatgatgtctggatttgtagttattgtttgattggtaattgggttcaggttttgagttggagttttggtttgatctgaaatag
| || ||| | || || ||  | | || | |||||   || |||   |||||||||||||||||||| || || || || |||||||| || ||||||||||||| ||   ||   |||    |    ||   |  | | | | ||  |         |     | ||   | |||| |  |  ||    |     ||  
TGGTTGGGCGGGCCCTTCCTACCGCGACCAATGAGACACCTAAGGCTTACCGCATGAAGCTCTGGGCCACCAACGAAGTGCGCGCCAAGTCTAAGTTCTGgtatggtgttgtagtttaagttcgaaaagaaacgacgctctcgctttgtgtaattccagagaatgcttcgaaattggtggatctgtgctttagatgatga

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S5_178V6.1 (Physcomitrella patens), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgattggtaattgggttcaggttttgagttggagttttggtttgatctgaaatag----
| |||||| | || || ||  | |  | | |||||   || ||    |||||||||||||| |||||||| ||||| || |||||||| || || ||||||||     | | || |  |   |||| ||     | | |       ||||  |  |   |    || |    || | || |||       |  || |||    
TGGTGGGGCGGGCCCTTCCAACTGCAACCAATGAGGCCCCTAAAGCTTACCGCATGAAGCTTTGGGCGACCAATGAAGTCCGCGCCAAGTCTAAATTCTGgtact---gttgtgttgcttcagtcttgaaagtcattgaggagcacattgtaatgtctttctctgtgtcttctttgtgtcttgaagacgacgaaattaggtgt

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S184_111V6.1 (Physcomitrella patens), 5'ss of exon 2
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgattgg-taattgggttcaggttttgagttggagttttggtttgatctgaaatag--------
| |||||  | || |||||  | |  | | |||||   || |||   |||||||||||| | |||||||||||||| || |||||||| || ||||||||||| ||    | | | ||    ||||        ||| |     ||||| | | || ||    |  | ||    | |||  ||   |   ||  |||| |        
TGGTGGGTCGGGCCCTCCCAACTGCTACCAATGAGACCCCCAAGGCATACCGCATGAAGTTGTGGGCGACGAATGAAGTGCGCGCCAAGTCGAAGTTCTGgtacgt----tttcacaa----gtctcataagaaagtcagaaggtgattagatgatcggtgctatttcttttcgttgagacttacctcactcataaattgtattcaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871250|gb|DT020305.1|DT020305
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110706824|gb|EE082690.1|EE082690
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|351020339|gb|FQ445946.1|FQ445946
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71867935|gb|DT016990.1|DT016990
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|349813933|gb|FQ414167.1|FQ414167
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110383230|gb|EC947588.1|EC947588
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30328166|gb|CD011428.1|CD011428
EST:     GCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: GCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|351022806|gb|FQ428715.1|FQ428715
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110371329|gb|EC935267.1|EC935267
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71873088|gb|DT022143.1|DT022143
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110695039|gb|EE072600.1|EE072600
EST:     CTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30322555|gb|CD005817.1|CD005817
EST:     GCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: GCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110706856|gb|EE082750.1|EE082750
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110413595|gb|EC979387.1|EC979387
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|349825489|gb|FQ419406.1|FQ419406
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|349816020|gb|FQ403637.1|FQ403637
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110707425|gb|EE083816.1|EE083816
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|27581974|gb|CB004669.1|CB004669
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110702593|gb|EE081118.1|EE081118
EST:     CGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30323910|gb|CD007172.1|CD007172
EST:     GCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: GCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110365491|gb|EC928562.1|EC928562
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71873999|gb|DT023054.1|DT023054
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110389914|gb|EC954788.1|EC954788
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|87584263|gb|DY473493.1|DY473493
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|37188354|gb|CF607703.1|CF607703
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110708792|gb|EE086737.1|EE086737
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110691642|gb|EE069976.1|EE069976
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71865522|gb|DT014577.1|DT014577
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|34416996|gb|CF415750.1|CF415750
EST:     GCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: GCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|351027831|gb|FQ448401.1|FQ448401
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110715252|gb|EE093093.1|EE093093
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|37188715|gb|CF608064.1|CF608064
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|37190352|gb|CF609701.1|CF609701
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71890777|gb|DT039832.1|DT039832
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77586590|gb|DV222421.1|DV222421
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110373629|gb|EC937883.1|EC937883
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71875042|gb|DT024097.1|DT024097
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|33404943|gb|CF210570.1|CF210570
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77586925|gb|DV222609.1|DV222609
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30326584|gb|CD009846.1|CD009846
EST:     GCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: GCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110715137|gb|EE092842.1|EE092842
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30326958|gb|CD010220.1|CD010220
EST:     CGCATGAAGCTCTGGGCCACAAATGAGGTTCGCGCCAAATCGAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|30251436|gb|CB969169.1|CB969169
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|351028650|gb|FQ446323.1|FQ446323
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|71877094|gb|DT026149.1|DT026149
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|349827194|gb|FQ421467.1|FQ421467
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110703310|gb|EE080042.1|EE080042
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|77582145|gb|DV220031.1|DV220031
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110378157|gb|EC943276.1|EC943276
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110692176|gb|EE071118.1|EE071118
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|110410603|gb|EC976291.1|EC976291
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
EST: gi|352781424|gb|FQ468268.1|FQ468268
EST:     CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTG                         GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT
genomic: CGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtggga ... tctgaaatagGTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGTGGGGAGAGCTCTCCCGTCGGAGAGCGATGAGCATCCGAAGATCTACCGCATGAAGCTCTGGGCGACGAATGAGGTTCGCGCCAAATCCAAGTTCTGgtatgtgggatatgataatgatgtctggatttgtagttattgtttgattggtaattgggttcaggttttgagttggagttttggtttgatctgaaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC