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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag

Basic information

species Vitis vinifera
transcript Vv10s0003g02830.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os05g50510.1 (Oryza sativa), 5'ss of exon 7
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttct--ctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
|||||| || || |||||||| |||||||||||||||||||| || || ||||| |||||||| |||| ||| ||||||||| ||||| | ||| |||||||  || |  ||   |     |      |  |||||  |   | ||  || | |       ||  |  | ||| |   ||  ||| | |||  ||                           
AATTCGGGTGTTCATTGCTGCCTATGTCTGGATGACTGGATTCGGGAATTTCTCATATTATTATATCAAGAAAGATTTTAGCATTGCAAGATTTGCACAGgtttccatcctagcccaattatccaatgttgtttcttaccccttgatttgttgtaaccatcttagaaatactaaagaccatctttta-aatgcag---------------------------

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g44040.2 (Oryza sativa), 5'ss of exon 7
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
||||||||| || |||||||| ||||||||||||||||||||||| |||||||| || ||||| || | ||| || ||||| |||||  | ||| | |||||| | ||  | ||  | |||      |||  |||| ||| |    |  | | ||   ||||||||| ||  |||| |   |  ||  ||||   ||  || | |   ||||||||||||
AATTCGTGTTTTCATTGCTGCCTATGTCTGGATGACTGGATTTGGGAACTTCTCATACTATTATATTAAGAAAGACTTTAGTCTTGCCAGATTTGCTCAGgtgccatt-ctgatctttaacc--ccaatctgttctatatga----tactttagtatgttttcatttccttgatttaa---tgcatggtttacactgacaaccata--tttctaatgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 2
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
||| ||||| || ||||||   ||||||||||||||||||||||| || ||||||||||| || |||| ||| ||||||||  ||||| | ||| | |||||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | |       |||| |  | |   ||     | || ||||||| | |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCGCAGgtgcctatgctacctc--atcagtcttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcact--agaccaataactatactttcca-tgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC218988.3_FGT003 (Zea mays), 5'ss of exon 2
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
|||  |||| || ||||||   ||||||||||||||||||||||| || ||||||||||| || |||| ||| ||||||||  ||||| | ||| | |||||| |  || ||  ||  | | || | ||  | |          | |||  ||  ||   |  ||||| | |       |||| |  | |   ||     | || ||||||| | |||||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacctc--atcagtcttattttgtgctatgccctaatgagtttagtctcctgtattttttgttaccgccttttaagcact--agaccaataactatactttcca-tgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AC208418.3_FGT009 (Zea mays), 5'ss of exon 3
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
|||  |||| || ||||||   ||||||||||||||||||||||| || ||||||||||| || |||| ||| ||||||||  ||||| | ||| | |||||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||| | |       |||| |  | |   ||     | || ||||||| | |||||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgtctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtattttttgttaccgccttttaagcact--agaccaataactatactttcca-tgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G147351_T01 (Zea mays), 5'ss of exon 1
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
||| ||||| || ||||||   ||||||||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||  ||||| | ||| | |||||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | |       |||| |  | |   ||     | || ||||||| | |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcact--agaccaataactatactttcca-tgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 2
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
||| ||||| || ||||||   ||||||||||||||||||||||| || ||||| ||||| || |||| ||| ||||||||  ||||| | ||| | |||||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | | |  |   ||| |     ||| |    || || ||||||| | |||||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgt-taccgccttttaagcactagaacaataa-ctatactttcca-tgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 2
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
||| ||||| || ||||||   ||||||||||||||| ||||||| || ||||||||||| || |||| ||| ||||||||  ||||| | ||| | |||||| |  || ||  ||  | | || | ||  | |      |   | |||  ||  ||   |  ||||  | |       |||| |  | |   ||     | || ||||||| | || ||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTAGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgtgcctatgctacctc--atcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcact--agaccaataactatactttcca-tgtag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G08730.1 (Glycine max), 5'ss of exon 8
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgacc-ttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttagg-atgtgaatctttactttctaatgcag
||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| |||| ||| | ||||| |   |  || |   | ||   |  |||  || || || | |   |   |||||  || | | ||| ||||   ||  |||  ||||   |   |  | | || |||   | |  |||||
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATATCAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaagagtcattgaccttaaa---taccatt-ttgctttacttggtatc-cattgt--ctatccttttcctattactctttttgcataaacaatatacctaactcgttaaaatttcttgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 8
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataattta-ggatgtgaatctttactttctaatgcag
||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||  | || || |||||||||||| |||| ||| | ||||| |    ||      ||| ||     | ||||| |   |||       |    |  || | | ||| || |   ||  |||  ||||   |   |  | | || |||   |    |||||
AATACGTGTTTTCATTGCTGCATATGTTTGGATGACTGGATTTGGAAACTTCTCCTATTATTATGTTAGAAAAGATTTTAGCCTTCCACGTTTTGCTCAGgtaatagagtc---cttgaccttaaataccatttttgctttactttgtgtccactgtctatccttttcctgttactctttttgcataaacaatatacctaactcgttaaaattccttgcag

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 8
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||||| || || ||  |||| ||||||||     ||||||| ||| | |||||||     || ||||   |        || |   | || | ||  | ||     ||       ||   | | || ||                                          
AATCCGTATCTTTATTGCTGCTTATGTTTGGATGACTGGTTTTGGAAACTTCTCTTACTACTATGTCAGAAAGGATTTCTCTGTTGCACGTTTTGCGCAGgtgatacaattcattccacaaaaagctctcgtcattgtacttga--taatccgcatctaaaatcttggttctcttgcag-----------------------------------------

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G34410.1 (Arabidopsis thaliana), 5'ss of exon 7
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatatt--gttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
|||  | || || |||||||| || |||||||||||||| ||||| |||||||| ||||| || ||||| ||||||||   ||| ||||| ||||| ||||| |  |   |     || || |||  || | ||  | || | |  || |  |  |   | | |  ||||| ||   ||||    |||  |     |||  ||  |||||||  |   |   
AATCAGGGTTTTCATTGCTGCCTACGTCTGGATGACTGGGTTTGGGAACTTCTCTTATTACTATATCAGAAAGGATTTCTCCCTAGCACGATTTACTCAGgtcatttcaat-----tgcacagtta-attagttgaccatgatatatgcttctaagggacatgttgttttcaatgactcaa----gatgctc----atgaaaacttttacttcttccag---

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S5_239V6.1 (Physcomitrella patens), 5'ss of exon 7
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag--
 ||||| || || |||||||| || ||||||||||| || || || ||||| ||||| ||||| ||  |||||||||||||| | |  || ||| |||||||    | ||| |   ||||||      | |  ||| |||| | ||  |   ||            |   | |   |||      ||    | |  |  | ||| |      |  | |||  
CATTCGGGTGTTCATTGCTGCTTACGTCTGGATGACGGGTTTCGGCAACTTTTCCTACTATTATATTCGGAAGGATTTTAGCTTGGGCCGTTTTGCACAGgt----tggttgag--tgaact------tgacatctatattggtaggaaccatgc----------ctggaacaaggcaaaacaactacccaaagtgggtattctctttgccttgtttcagtc

upper sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ29067 (Selaginella moellendorffii), 5'ss of exon 7
AATTCGTGTCTTTATTGCTGCATATGTCTGGATGACTGGATTTGGAAACTTCTCCTATTATTACATCAGGAAGGATTTTAGCCTTGCACGCTTTACACAGgtgaccttgttaattctgaactgtttcatcatttctctattagaagtgatattgttccttttcattttctatatttcaattttgataatttaggatgtgaatctttactttctaatgcag
 || ||  |||| ||||| |  |||||||||||||||||||| || ||||| ||||| |||||  |  | |||||||| ||||| |  || ||| | ||||| ||    |    | || |||  |   |   | || | | |       |   |                                                                  
TATACGACTCTTCATTGCGGGTTATGTCTGGATGACTGGATTCGGGAACTTTTCCTACTATTATGTGCGAAAGGATTTCAGCCTGGGTCGGTTTGCTCAGgtaactgctt---ctttgcactcgtaagttcatgctttgtgaacgcacttgcag------------------------------------------------------------------