1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagtttttattttttattttttaattttctttctcaaatttctcttttatcagaattcactaattttccattttactctctttctccagtcgtgtttg...
species | Vitis vinifera |
transcript | Vv10s0003g02760.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|110373435|gb|EC937671.1|EC937671
genomic: GCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: TTCCGGC-AAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|110379625|gb|EC944835.1|EC944835
genomic: TTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: TCCGGCGAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|110699583|gb|EE076708.1|EE076708
genomic: TCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: TTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|110722790|gb|EE099364.1|EE099364
genomic: TTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|351018368|gb|FQ439180.1|FQ439180
genomic: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: GCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|351040188|gb|FQ425274.1|FQ425274
genomic: GCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|110701897|gb|EE079989.1|EE079989
genomic: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|32250089|gb|CD715908.1|CD715908
genomic: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|110686798|gb|EE064846.1|EE064846
genomic: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: ATCGCGGACAAATTTTCCGGCGAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|349832724|gb|FQ422082.1|FQ422082
genomic: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: GCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|32250057|gb|CD715876.1|CD715876
genomic: GCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAAEST: gi|351043288|gb|FQ444009.1|FQ444009
genomic: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
EST: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATG GAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
genomic: ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagttttt ... tttttcatagGAGTCATGCCCTTCTGTAAAAAACATTCTCCTCCTGGATTCTGAAGGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCGGACAAATTTTCCGGCAAAACCGTCAAACATGgtcagtttttattttttattttttaattttctttctcaaatttctcttttatcagaattcactaattttccattttactctctttctccagtcgtgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc