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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCCACCCTACTCAAGTGCAAGAGGCGAAGACATACTCAAGGGAGTGAACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaaatttaatttctatgcccattaattagctgccaccatttcaagttcagtctattctagaaaacattaaaaaactgttttcgaaaactgctttcaaaaatcattttaggaatagttttccaactctaattatttattctactttccatttaatttgatggtag

Basic information

species Vitis vinifera
transcript Vv10s0003g02120.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053059|gb|FQ456666.1|FQ456666
EST:     ACAATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|351031225|gb|FQ445250.1|FQ445250
EST:     ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|351032687|gb|FQ462401.1|FQ462401
EST:     ACAATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|351054406|gb|FQ450489.1|FQ450489
EST:     ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|351031777|gb|FQ460034.1|FQ460034
EST:     ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|351032602|gb|FQ462316.1|FQ462316
EST:     ACAATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|33404920|gb|CF210547.1|CF210547
EST:     ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|351030435|gb|FQ432373.1|FQ432373
EST:     ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|351045257|gb|FQ451705.1|FQ451705
EST:     ACAATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTATCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
EST: gi|161708620|gb|FC058355.1|FC058355
EST:     ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTG                         GGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT
genomic: ACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaa ... ttgatggtagGGAGGTCGGATTAGCATGAATGGACAACTAAGAAATTACCAAACCACGGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTCCACCCTACTCAAGTGCAAGAGGCGAAGACATACTCAAGGGAGTGAACTATGCCTCCGCTGCTGCTGGAATTAGAGATGAAACTGGGCAGCAACTGgtacttccaaatttaatttctatgcccattaattagctgccaccatttcaagttcagtctattctagaaaacattaaaaaactgttttcgaaaactgctttcaaaaatcattttaggaatagttttccaactctaattatttattctactttccatttaatttgatggtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG