Sequence
atgc intronic sequence ATGC exonic sequenceCTTCATCGTGTGGAATCCAGAAGATTTTTCAAGGGATTTGCTGCCGAGGTTCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATgtaaggccaccgattattttttattgggaattttacgttattgtttattttgtggctctgtattgcatttcggaagagtagattctgaaattatattggg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g01770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G12630.1 (Glycine max), 5'ss of exon 2
CTTCATCGTGTGGAATCCAGAAGATTTTTCAAGGGATTTGCTGCCGAGGTTCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATgtaaggccacc-gattat----tttttattgggaattttacgttattgtttattttgtggctctgtattgcatt-tcggaagagtagattctgaaattatattggg------------------
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TTTCATTGTATGGAATCCCCCAGAATTTGCCAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAACACATATgtaagcaaatttgatcttgatcttgttgatgtgaatactac-ttattttgtgttgtattg-tatgtgttgcctcattctgattttggtttcttaaactgagtggtagcctctttacttgagcag
upper sequence: Vv10s0003g01770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G29470.1 (Glycine max), 5'ss of exon 1
CTTCATCGTGTGGAATCCAGAAGATTTTTCAAGGGATTTGCTGCCGAGGTTCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATgtaaggccaccgattatt--ttttattgggaattttacgttattgtttattttgtggctctgtattgcat-ttcggaagagtagattctgaaattatattggg-------------------
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TTTCATTGTATGGAATCCCCCAGAATTTGCCAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAACACATATgtaagcaaatttgatcttggtcttgttgatgtaaatactacttgttttgtgttgttg-tatgtgttgctcctttctgcttttagtttcttaaact-tagtggtagcctctttacttgagcag
upper sequence: Vv10s0003g01770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G09280.1 (Glycine max), 5'ss of exon 1
CTTCATCGTGTGGAATCCAGAAGATTTTTCAAGGGATTTGCTGCCGAGGTTCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATgtaaggccaccgattattttttat---tgggaattt--tacgttattgtttattttgtggctctgtattgca--tttcggaagagtagatt-----ctgaaattatattggg-----------------
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TTTCATTGTTTGGAACCCACCAGAGTTTTCAAGGGATTTGTTACCCAAATACTTTAAGCACAACAACTTTTCCAGTTTCATCAGGCAGCTCAACACTTATgtaagcaaattcaatcttcttcatatttatggatttgataacttgtttttttcttctttgttttgttttcttgttttcacatgaatggtttgattgcttgaactatgccatggttttctgtttgatcag
upper sequence: Vv10s0003g01770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G18880.1 (Arabidopsis thaliana), 5'ss of exon 1
CTTCATCGTGTGGAATCCAGAAGATTTTTCAAGGGATTTGCTGCCGAGGTTCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATgtaaggccaccgattattttttattgggaattttacgttattgtttattttgtggctctgtattgcatttcggaagagtagattctgaaattatattggg
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TTTCATCGTTTGGAATCCGCCGGAGTTTTCTAGAGATCTTCTTCCGAGATTCTTCAAGCACAATAACTTCTCTAGCTTTATCCGCCAGCTTAACACATATgtaagtgttttcatgctttgtttaaaagtattg-actaaatcaatcatcttcttagtggaatttgtttttgtgtgtag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716521|gb|FC066206.1|FC066206EST: TCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATAT GGCTTTAGAAAAATTGATTCAGAGCAGTGGGCATTTGCAAATGAGGATTTT
genomic: TCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATgtaaggccac ... ccttaaccagGGCTTTAGAAAAATTGATTCAGAGCAGTGGGCATTTGCAAATGAGGATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCATCGTGTGGAATCCAGAAGATTTTTCAAGGGATTTGCTGCCGAGGTTCTTCAAGCACAATAACTTCTCCAGCTTTATCAGGCAGCTCAATACATATgtaaggccaccgattattttttattgggaattttacgttattgtttattttgtggctctgtattgcatttcggaagagtagattctgaaattatattggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagta