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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATAAGAGTTATCCCAATGAAGAAAAATCACCTGTACTGATGTATGATCGGCTTCTAAATTTGGCTTCTAGTGCCCTTGCAGAGgtttgtttcataacttttaaagtccatatgtatattaatacgtgcttgtcagatacatgattagatatatttcttaaacatctggagccttgattgtgctacag

Basic information

species Vitis vinifera
transcript Vv10s0003g01470.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01470.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G30070.1 (Glycine max), 5'ss of exon 1
GAGGATAAGAGTTATCCCAATGAAGAAAAATCACCTGTACTGATGTATGATCGGCTTCTAAATTTGGCTTCTAGTGCCCTTGCAGAGgtttgtttcataacttttaaagtccatatgtatattaatacgtgcttgtc---------agatacatgattagat---------atatttcttaaacatctggagccttgattgtgctacag
                         ||  ||| || |||   |||||||| ||||||||||| |||||||| ||||| |||||||||||| |    | || |||  |  |  ||||| || ||  ||  |  || |          ||||||   |||| ||         || | | |  || ||   |||| ||  ||   ||||||
-----------------------CAAACGATCGCCAGTATATATGTATGAACGGCTTCTAAACTTGGCTTCCAGTGCTCTTGCAGAGgttagga--acaaatttgcagattgatatgcatgtttttagataatttttttagtatttagatactgtattatatttgaagttcatctctatctaatattctgagcttttgtta--ctacag

upper sequence: Vv10s0003g01470.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G09080.1 (Glycine max), 5'ss of exon 1
----------GAGGATAAGAGTT---ATCCCAATGAAGAAAAATCACCTGTACTGATGTATGATCGGCTTCTAAATTTGGCTTCTAGTGCCCTTGCAGAGgttt---gtttcataacttttaaagtccatatgtatattaatacgt-gcttgtcagatacatgattagatat--atttcttaaacatctggagccttga--ttgtgctacag---
           ||| ||    ||   |   | |     || |||| || |||   |||||||| ||||||||||| |||||||| ||||| ||||||||||||      || | |  ||   | ||   ||   | |  ||||  | |  ||| ||||||   |||| || |  | ||| |     |||       |||  || || |||     
TTTCAATGAAAAGGGTAGAGATTCCTACATCTACAGCAAACAATCGCCAGTATATATGTATGAACGGCTTCTAAACTTGGCTTCCAGTGCTCTTGCAGAGgttatcaaatttacagattaataggtttttagacaaaaaaatatttagtatgttagatactgtattatatttgaagttcatctgtgtctaatattctgagcttttgttactacag