1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGATGATGCTGATACAGCGACCAGGGAAGCCAACGAAGAGATTGGGTTGGACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAGgtaagatggattttttatttttatttttaatatataatatgatttaaatgatttgcatgctatactttaatcaacctgaaattggtaccagttttctgag...
species | Vitis vinifera |
transcript | Vv10s0003g00880.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAG CACCTCCTAAGGGTTGTTCCTGTTATTGGCATACTTTCTGATAAGAAAGCAEST: gi|110709463|gb|EE084944.1|EE084944
genomic: ACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAGgtaagatgga ... ttccatgcagCACCTCCTAAGGGTTGTTCCTGTTATTGGCATACTTTCTGATAAGAAAGCA
EST: ACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAG CACCTCCTAAGGGTTGTTCCTGTAATTGGCATACTTTCTGATAAGAAAGCAEST: gi|110698121|gb|EE075771.1|EE075771
genomic: ACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAGgtaagatgga ... ttccatgcagCACCTCCTAAGGGTTGTTCCTGTTATTGGCATACTTTCTGATAAGAAAGCA
EST: ACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAG CACCTCCTAAGGGTTGTTCCTGTTATTGGCATACTTTCTGATAAGAAAGCA
genomic: ACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAGgtaagatgga ... ttccatgcagCACCTCCTAAGGGTTGTTCCTGTTATTGGCATACTTTCTGATAAGAAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATGATGCTGATACAGCGACCAGGGAAGCCAACGAAGAGATTGGGTTGGACCCTTCCCTTGTAAATGTTGTAACTGTTCTTGAGCCATTCTTGTCTAAGgtaagatggattttttatttttatttttaatatataatatgatttaaatgatttgcatgctatactttaatcaacctgaaattggtaccagttttctgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaattgg