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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCAGAACCTTCCAAATGTGACAAATTTGCTTGCAACAGTATTGATCTTCCTTATTGTTATCTACTTCCAAGGGTTTCAGGTGGTTTTGCCTTGTGAGgtcaaataatgctcatagacagcagggttcatatcttattatgttgttctacacttctaacgtgcccatcattctacagtctgctcttgtttccaacctt...

Basic information

species Vitis vinifera
transcript Vv10s0003g00710.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g17840.1 (Oryza sativa), 5'ss of exon 3
TCGGCAGAACCTTCCAAATGTGACAAATTTGCTTGCAACAGTATTGATCTTCCTTATTGTTATCTACT-TCCAAGGGTTTCAGGTGGTTTTGCCTTGTGAGgtcaaataatgct-catagacagcagggttcatatcttattatgttgttctacac-ttctaacgtgcccatcattctacagtctgctcttgtttccaacctt----
  ||||| |     || ||   |  || ||| |  | ||| | |  | | | |  ||  || |  ||| | ||  | || |       | | | |  |            ||||  |     ||  |  ||  ||   | |||  |   |   ||  || |||| ||   |     | |   |   |   | |||      ||    
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTT--CTACACT-TCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAAC--CTCTACTTCATATCACAGgtgcgtgctgtaattgtagtggctttagtaatat-ttacatgactgagcaagttttaacatgataactgagcaagttttaacatatatttattttgttgcag

upper sequence: Vv10s0003g00710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 3
TCGGCAGAACCTTCCAAATGTGACAAATTTGCTTGCAACAGTATTGATCTTCCTTATTGTTATCTACT-TCCAAGGGTTTCAGGTGGTTTTGCCTTGTGAGgtcaaataatgctcatagacagcagggttcatatcttattatgttgttctacacttctaacgtgcccatcattctacagtctgctcttgtttccaacctt
  ||||| |     || ||   |  || ||| |  | ||| | |  | | | |  ||  || |  ||| | ||  | || |       |    | | | |           | |  |  |  || |   | |||| |||   |  || || |   || |||| ||    | ||| |   |                     
GGGGCAGCAAGGCTCATATCCAATTAAGTTGTT--CTACACT-TCAAACATGCCCATCATTCTGCACTCTGCACTGATTACCAACCTCTACTTCATATCACAGgtgcgtgcggtattgtagtgccgcagtaatat-ttacattactgatcaa-gtttttaacatgttt-ttattttgttgcag------------------

upper sequence: Vv10s0003g00710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G307252_T02 (Zea mays), 5'ss of exon 3
--------------------TCGGCAGAACCTTCCAAATGTGACAAATTTGCTTGCAACAGTATTG-ATCTTCCTTATTGTTATCTACTTCCAAGGGTTTCAGGTGGTTTTGCCTTGTGAGgtcaaataatgctcatagacagcagggttcatatcttattatgttgttctac--acttctaacgtgcccatcattctacagtctgctcttgtttccaacctt-
                     |  ||  |     |    |||   ||||||   |       |||| ||  | |    | ||   ||||  ||  | |   | ||   |   |   | ||||     ||  |     |     ||    | |    ||    || |  | ||      |    | |    |||  | | ||   |   | ||||      |   
GAAGGCGTTTAGCCCAACAACCATCAACAGTGGGCGTG-GTGCTGAATTTGAAGGGGCAGTCATTGCATTGTTCCATCTATTGATTACTCGCACAGATA--AAgtccgtgctctacgcgaggctttctaccgtcagaatcttccaaatgtgaccaatttacttgctactgtattggtcttcctcatagttatctatttccaaggtttccgtgttgtacttccag