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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGACAACAATTGGAGGAGAGGAATTTGAGAAGCAAACAAAATAAGGCTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatatttacataaatacaatgaagttagtgctattggtcctgtacattcttctagaaatcaaaacagtatcttggtgcttcaaatatgaaccaca...

Basic information

species Vitis vinifera
transcript Vv09s0070g00130.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110424125|gb|EC990481.1|EC990481
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|110707697|gb|EE084394.1|EE084394
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|110729308|gb|EE105444.1|EE105444
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|110723130|gb|EE100088.1|EE100088
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|71858171|gb|DT007226.1|DT007226
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|110702626|gb|EE078762.1|EE078762
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|30134184|gb|CB919522.1|CB919522
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|161710238|gb|FC058954.1|FC058954
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|71854852|gb|DT003907.1|DT003907
EST:     CTTTCAATTTGAAAACGGCTGAGCAATGCATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
EST: gi|110731600|gb|EE106153.1|EE106153
EST:     CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGG                         GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA
genomic: CTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatat ... ttgcatccagGAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAGACAACAATTGGAGGAGAGGAATTTGAGAAGCAAACAAAATAAGGCTTTCAATTTGAAAACGGCTGAGCAATACATCCAAGAGTACCGAAATAGGgtaactatatttacataaatacaatgaagttagtgctattggtcctgtacattcttctagaaatcaaaacagtatcttggtgcttcaaatatgaaccaca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacag