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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgttaaagcaatgggttccttcctttctccacttccgttttttcataatggataaaataacttgtgaaacaacactgtcattccag

Basic information

species Vitis vinifera
transcript Vv09s0070g00100.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0070g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G177654_T01 (Zea mays), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagt------tgttaaagcaatgggttccttcctttctccacttccgttttttcataatggataaaataacttgtgaaacaacactgtcattccag---
|||||||||||||||||||||| | | ||||||||| ||||| || |||  |||||||||||| || |||||  || ||  |||||||||||| ||||| ||| ||      || |    | ||  ||  |  ||  |  ||  ||| | ||||  |     |   |||| |    ||  | |   |||| |  |  |   
GGACCGTCTCTTCCACAACAAGGTATACAACCGCTACGTCAAGCGCACCTCCAAGTTCATGGCACACGACGATGACGACTCCTGCAACATTGGCGACCGGgtctgtaattcttgctccttcgattcgtctccaccccttccccgttctgattttgtaaggctgtggaaattagcgatgcta-acttctgtaagactggtgt

upper sequence: Vv09s0070g00100.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G49400.1 (Arabidopsis thaliana), 5'ss of exon 1
GGACCGTCTCTTCCACAACAAGCTCTTCAACCGCTATGTCAAACGAACCAGCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgttaaagcaatgggttccttcctttc--tccacttccgttt--tttcataatggataaaataacttgtgaaacaacac--tgtcattccag----------------------------------------
 ||  | ||||||||||||||  ||| ||| ||||| |||||||||||   ||| ||||||||||| |||||  |  ||  ||||||||| || || ||||| | || |    ||| |   ||| | ||||||  || | || |||||  || | |  |  | |    | |   |  ||  |  |  ||| |||  |                                         
CGATAGACTCTTCCACAACAAAATCTACAATCGCTACGTCAAACGAACTTCCAAATTCATGGCTCACGACGACAAAGACGCCTGCAACATCGGCGATCGAgtaaattctctc-gcatttccttcttccctttcactctaatttcgtttgattccgtcttttaaatctgagccacttgaattaggctttgtgattgaacctctgaggctaagaaatttgaaaatctggttgatgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110414010|gb|EC979830.1|EC979830
EST:     GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA                         GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
EST: gi|351014560|gb|FQ437562.1|FQ437562
EST:     GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA                         GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
EST: gi|110424195|gb|EC990551.1|EC990551
EST:     GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA                         GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
EST: gi|110413992|gb|EC979812.1|EC979812
EST:     GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGA                         GTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT
genomic: GCAAGTTCATGGCTCATGACGAACACAACCTCTGCAACATTGGTGACCGAgtcagttgtt ... gtcattccagGTTAGGTTGGATCCTTCTAGGCCCTTGAGCAAGCACAAGCATTGGGTTGTT