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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAGgtttgtgctgtagtcatctactcaagtgcttgaatttcacatctacttctgcacttaatgcattttacatcctagggtcttcttacataaaacttggaat...

Basic information

species Vitis vinifera
transcript Vv09s0054g01360.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G00330.1 (Glycine max), 5'ss of exon 5
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAGgt---ttgtgctgtagtcatctactcaag-tgcttgaat---ttcacatctacttctgcacttaatgcattttacatcctagggtctt-cttacataaaacttggaat--
||  | ||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || |||  |||||||||||||||||||   ||    |    | || |  |||   || ||| |    |  | || ||  |  |    ||    || ||  ||| |    |||  ||| ||    |  |    |  
ATACTCGGTGTATTTGATTGGTGCGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCTTTTCTTCCTATGCATCCAGgtagatttaattaattttattttgtcactctgtttggaatgatatatatttaaattggtgaatatacaatatttaatcattaaatctcacttccaccttaactattgtag

upper sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G27620.1 (Glycine max), 5'ss of exon 2
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAGgtttgtgctgtagtcatctactcaagtgct-tgaatttcaca-tctacttctgcactt---aatgca---ttttacatcctagggtctt-cttacataaaacttggaat--
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| |  | |||||   ||||||||||||||||||||     | |  |  | || |      || |  |||  ||| | ||  | |  | |    |||  |   | ||  ||| | |  |||   || ||  | | ||    |  
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATTATTCCTTCGTTTCTTCCTATGCATCCAGgttgagtttattttattttattttgtcactctttattcaacaatatatgtttaaattgttgaatatacgatgtttaatcattgaatctcattttcaccataattattgtag

upper sequence: Vv09s0054g01360.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G24160.1 (Glycine max), 5'ss of exon 5
ATTTTTGGCTTGTTTGACTGGTCAGGAAGCAACCCAATGCCCCCAGAGTTTTGGCTCTTCCCTTCTCGTCTTCCTATGCATCCAGgtttgt---gctgtagtcatctactcaagtgcttgaatttcacatctacttctgcacttaa---tgcattttaca-tcctagggtct---tcttacataaaacttggaat
||  ||||  | ||||| ||||  |||||||||||||||||||||||||||||| || | || ||   ||||||||||||||| ||| | |     |    | || |  |||     ||     | | || || ||       | |   | || | || | || |    |||   | |||| | ||   | | | 
ATACTTGGTGTATTTGATTGGTGTGGAAGCAACCCAATGCCCCCAGAGTTTTGGATCCTTCCATCGTTTCTTCCTATGCATCCGGgtatatttgattaactttattttgtcactctttttggaatgatatatatttaaattggtgaatatacaatgtataatcattaaatctcacttttaccttaattattgtag