Sequence
atgc intronic sequence ATGC exonic sequenceTACCTTACGAAGGGGCTTAAATTTCTATTCAACTATTCAGGCACATGATGGTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTGgtaagagctgactttttgaatggcacatgttcctccatttgtcaattaaccaatgctatttgtcagggttgaatctggtgagaaccctttttatttttat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g01090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g04690.1 (Oryza sativa), 5'ss of exon 5
TACCTTACGAAGGGGCTTAAATTTCTATTCAACTATTCAGGCACATGATGGTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTGgtaagagctgactttttgaatggcacatgttcctccatttgtcaattaaccaatgctatttgtcagggttgaatctggtgagaaccctttttatttttat-------
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CTCTTTGAAAAGGGCGATTCGGCGTTATTCTACTCTTCAGGCACATGATGGACACTGGCCTGGGGATTATGCTGGTCCCATGTTCCTTCTTCCAGGCTTGgta-----cttccttttcactgctgtgggaaaatggatctgttga--aattcatccacatcgttattagctaaattcacaatttctttcatgaggtaaaacattcca
upper sequence: Vv09s0054g01090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g04710.2 (Oryza sativa), 5'ss of exon 2
TACCTTACGAAGGGGCTTAAATTTCTATTCAACTATTCAGGCACATGATGGTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTGgtaagagctgactttttgaatggcacatgttcctccatttgtcaattaaccaatgct--atttgtcagggttgaatctggtgaga-accctttttatttttat-------------------------------------------------------------------
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CTCTCTAAAAAGGGCAATTGCTCGTTATTCTACTTTTCAAGCACATGATGGACACTGGCCTGGGGATTATGGTGGTCCCATGTTCCTTATGCCAGGCTTGgta----ctcttctaactcaccacaagtcgtttccaatttggttactcactaaaatttgaactatggaatttctttttaattactcataatcttgacctgtatgaaaagaaatgttccatactgcctgttatatgtgaaagttactcattatattttctattttactcag
upper sequence: Vv09s0054g01090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G023798_T01 (Zea mays), 5'ss of exon 2
TACCTTACGAAGGGGCTTAAATTTCTATTCAACTATTCAGGCACATGATGGTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTGgtaagagct--gactttttgaatggcacatgttcctccatttg-tcaattaacc--aatgctatttgtcagggttgaatctggtgagaaccctttttatttttat
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TACATTGAAAAGGGCAATCAGCCGTTTCTCTACTCTCCAGGCACATGATGGACACTGGCCTGGGGATTATGGTGGTCCTATGTTCCTTATGCCAGGCTTGgtgcctctttcaactcttcttctatagtgatatgtttaacttgcttacttcacttggatatgcattcctacgactaaatctgt---gctctgtgattaatctt--
upper sequence: Vv09s0054g01090.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G065494_T01 (Zea mays), 5'ss of exon 2
TACCTTACGAAGGGGCTTAAATTTCTATTCAACTATTCAGGCACATGATGGTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTGgtaa-------gagctgactttttgaatggcacatgtt-cctccatttgtcaattaaccaatgctatttgtcagggttgaatctggtgagaaccctttttatttttat
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TACTTTGAGAAGGGCAATCAGCCGTCTTTCTACTCTCCAGGCACATGATGGACACTGGCCTGGGGATTATGGTGGCCCTATGTTCCTTATGCCAGGCTTGgtacctctttcaactctacttctacagtgatatgttcaacttgcttacttcacttggataatcttgcttaaccttgcgatatgtt-taagacgaaattgtg-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37185333|gb|CF604686.1|CF604686EST: GTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTG GTCATTGCTTTATATATTACAGGAGCTCTGAATGTTGTCTTATCAATAGAA
genomic: GTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTGgtaagagctg ... attgcaacagGTCATTACTTTATATATTACAGGAGCTCTGAATGTTGTCTTATCAATAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACCTTACGAAGGGGCTTAAATTTCTATTCAACTATTCAGGCACATGATGGTCATTGGCCAGGGGATTATGGGGGTCCTATGTTTCTACTACCTGGTTTGgtaagagctgactttttgaatggcacatgttcctccatttgtcaattaaccaatgctatttgtcagggttgaatctggtgagaaccctttttatttttat
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