Sequence
atgc intronic sequence ATGC exonic sequenceGGAATGGCAGGGGCTGCTATGTATGAACTGGTCCGTGTTGGACATGACAACCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtattttgacttttaaaacgttttcttgttactgttgcattcttctcactgtatttactttaattttggaaaggtcttaatgtatgtcttcttgtttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 2
GGAATGGCAGGGGCTGCTATGTATGAACTGGTCCGTGTTGGACATGACAACCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtatt--ttgacttttaaaacgttttcttgttactgt-tgcattc-----ttctcactgtatttactttaattttggaaaggtc-ttaatgtatgtcttc-------ttgtttttt-----------
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GGAATGGGAGGTGCTGCCATGTATGAACTCGTCCGTGTTGGGCACGATAATCTTATTGGAGAAATTATTCGTCTTGAGGGGGATTCAGCTACAATTCAAGgtgtggaacagctctttagtttctatctt-taacagcatacagacacgagttctgatagcaattatatgcctgttgaaaccatagtcaatatctaacatcagaaatgttgttatttgtgtatcacag
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g45120.2 (Oryza sativa), 5'ss of exon 2
GGAATGGCAGGGGCTGCTATGTATGAACTGGTCCGTGTTGGACATGACAACCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtattttgacttttaaaacgt---tttcttgttactgttgcattcttctcac----tgtatttactttaattttggaaaggtcttaatgtatgtcttcttgtttttt-
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GGAATGGGTGGTGCTGCCATGTATGAACTTGTCCGAGTTGGTAATGATAACCTCATTGGGGAAATTATTCGTCTTGAGGGTGATTCAGCCACCATTCAAGgtatag-gacggtgaaattctacctcacatatttgtggtgccttttccccacatgacatgtacaatataaatttcaccaattttttct-tgtgattacc-gtttgcag
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 2
GGAATGGCAGGGGCTGCTATGTATGAACTGGTCCGTGTTGGACATGACAACCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtattttgacttttaaaacgttttcttgttactgttgcattcttctcactgta--tttactttaattttgga---aaggtcttaatgtatgtcttcttgtttttt-----------
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GGAATGGGTGGTGCTGCCATGTATGAACTTGTTCGTGTCGGACATGATAACCTCATTGGGGAAATTATCCGTCTTGAGGGCGATTCAGCTACAATCCAAGgtatgc-aacatggcagatcatctataataaattattcacccatgggcatgaaaagctcctttccagttgaatacacggtactaacctcgcgagtgccgtcatttgcgtgttgcag
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 2
GGAATGGCAGGGGCTGCTATGTATGAACTGGTCCGTGTTGGACATGACAACCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtattttgacttttaaaacgttttcttgttactgttgcattctt-ctcactgtatttactttaattttggaaaggtcttaatgtatgtcttcttgtttttt
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GGCATGGCTGGGGCTGCTATGTATGAACTCGTGCGTGTTGGTCATGATAATCTCATTGGTGAAATTATTCGTCTCGAAGGGAATTCTGCTACCATCCAAGgtgcattttcataccgtgtgcaatattactacttcaaactaattacttatgagaaactcattggttctctgcaa-ttttag--------------------
upper sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 2
GGAATGGCAGGGGCTGCTATGTATGAACTGGTCCGTGTTGGACATGACAACCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtattttgacttttaaaacgttttcttgttactg-ttgcattcttctcactgtatttactttaattttggaaaggtcttaatgtatgtcttcttgtttttt
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GGCATGGCTGGTGCTGCTATGTATGAACTCGTGCGTGTTGGTCATGATAATCTCATTGGTGAAATTATTCGTCTCGAAGGGGATTCTGCTACCATCCAAGgtgcatttccataccttctctaatgtttctgcaaactgcatccttct-gcgaaactcattcgttctctgcaa---ttttag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718002|gb|FC067562.1|FC067562EST: CCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGG TTTATGAAGAAACAGCTGGGTTGACGGTGAATGACCCTGTTCTACGTACAC
genomic: CCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtattttgac ... tttatctcagTTTATGAAGAAACAGCTGGGTTGACGGTGAATGACCCTGTTCTACGTACAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAATGGCAGGGGCTGCTATGTATGAACTGGTCCGTGTTGGACATGACAACCTTATTGGAGAAATTATTCGGTTAGAAGGAGATTCTGCCACAATCCAGGgtattttgacttttaaaacgttttcttgttactgttgcattcttctcactgtatttactttaattttggaaaggtcttaatgtatgtcttcttgtttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggaaa