Sequence
atgc intronic sequence ATGC exonic sequenceTGCTAATAACATTGTAGCATGCATGGCTAACACGATAGGGGCGGCTGAGTCTGTTTTGAGAGTTGCAGCAACTGGGCATGATAAGAGGCTCTTTGTTAAGgtaatctttaacaacttcattgttgtcgttgttgtttaacgaggtttttatacattcttgataaatcatgtttctgccttaagggctgaagaacttattt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00800.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G16825.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCTAATAACATTGTAGCATGCATGGCTAACACGATAGGGGCGGCTGAGTCTGTTTTGAGAGTTGCAGCAACTGGGCATGATAAGAGGCTCTTTGTTAAGgtaa-tctttaacaacttcattgttgtcgttgttgtttaacgaggtttttatacattcttgataaatcatgtttctgccttaagggctgaagaacttattt---
|| ||||||||| || || | ||||| || | || || ||||| || ||| || | ||||||||||| || ||||| ||||||||||||||||||| || | | ||| | |||| || | | |||| | | | | || |||| | || | | | ||
AGCCTGTAACATTGTGGCGCGCTTAGCTAATACTGTTGGAGCAGCTGAATCCGTTCTGCGGGTTGCAGCAACAGGACATGACAAGAGGCTCTTTGTTAAGgcaagtgcattctggtttcttccttgtttgcattacaagaggtagtttcttcgatcacccggtgcg----gtgcctgcatgaataggaaatgtgtataacaaca
upper sequence: Vv09s0054g00800.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT1G78895.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCTAATAACATTGTAGCATGCATGGCTAACACGATAGGGGCGGCTGAGTCTGTTTTGAGAGTTGCAGCAACTGGGCATGATAAGAGGCTCTTTGTTAAGgtaatctttaacaacttcattgttgtcgttgttgtttaacgaggtttttatac-attcttgataaatcatgtttctgccttaagggctgaagaact-tattt------
|| | |||||| || ||| || | ||||| || | || || || ||| |||| |||| |||||||||||||| ||||| ||||| || ||||| ||||||| | | | ||| || | || | | || | || | ||| ||||||| |||||| | | | || | | | | | ||| |
AGCAAGTAACATCGTTGCACGCTTAGCTAATACCGTTGGAGCAGCAGAGGGTGTTCTGAGGGTTGCAGCAACTGGACATGACAAGAGACTTTTTGTCAAGgtaag-tgtgtc--ctttgttaccaac-ttactatgta-caagataccgttactattcttgg---atcatgagtgtatcaaaatgcattagcatcaatatatcaccacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71869205|gb|DT018260.1|DT018260EST: CTGTTTTGAGAGTTGCAGCAACTGGGCATGATAAGAGGCTCTTTGTTAAG GTGGTTGTCTGTCTTTATGTGCTATCGGCTTTAGGACGGGTGGTCTCAGGT
genomic: CTGTTTTGAGAGTTGCAGCAACTGGGCATGATAAGAGGCTCTTTGTTAAGgtaatcttta ... ctctcttcagGTGGTTGTCTGTCTTTATGTGCTATCGGCTTTAGGACGGGTGGTCTCAGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTAATAACATTGTAGCATGCATGGCTAACACGATAGGGGCGGCTGAGTCTGTTTTGAGAGTTGCAGCAACTGGGCATGATAAGAGGCTCTTTGTTAAGgtaatctttaacaacttcattgttgtcgttgttgtttaacgaggtttttatacattcttgataaatcatgtttctgccttaagggctgaagaacttattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaac