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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTATGTTGATCCAGAGGTTAAACTTCTATTTGTTATTCGTATCCGTGGgtatgcgcacttggactatggttatttcccttgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcag

Basic information

species Vitis vinifera
transcript Vv09s0054g00060.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTATGTTGATCCAGAGGTTAAACTTCTATTTGTTATTCGTATCCGTGGgta----tgcgca-cttggactatg-gttatttcccttgatacctttact--ttcatattaatattctggttctcattcctgttcactctggaactttcag
 ||||||| |||||     ||||    ||||| ||||||||||||||||| || ||||| ||||||   || ||| | ||||| ||||| |||||||||||     | ||| ||| |||| ||  ||   | | |  ||   ||   |  | |  |   |||||  |     |||      |||   |   ||   |  
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact-

upper sequence: Vv09s0054g00060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S163_37V6.1 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTATGTTGATCCAGAGGTTAAACTTCTATTTGTTATTCGTATCCGTGGgtatgcgcacttggactatggttatttccc----ttgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcag---------------------------------------------------------------------------------
 | |||||  | |||   ||||||   ||||||||||| ||||||||||| ||||| || |||||   ||||||| | ||||| ||||| ||||||||||  |  ||     | |     |  | | |    | |  ||  ||    ||||| | |  |         || |  | | | ||      || ||                                                                                   
GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCTATGTCGAGCCAGAACCTAAACTTATGTTTGTCATTCGAATCCGTGGgttagttcaaagtcatttcaacttatgctcaatttaggaacgattttcatcatactgaattcacttcgaccacttttatactctgcattcctgtcgagtcatatttcagaattccttattcattttgaagtcggaggttccattcgaaaaattctgacttaggtccctttcgattcag

upper sequence: Vv09s0054g00060.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S243_40V6.1 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTATGTTGATCCAGAGGTTAAACTTCTATTTGTTATTCGTATCCGTGGgtatgcgcacttggactatggttatttcc--cttgatacc--tttactttcatattaatatt-ctggttct-cattcctgttcactctggaac--tttcag---------------------
 |||||||  ||||  | ||||||   ||||||||||||||||||||||| ||||| || ||||||  ||| ||| | ||||| || |||||||||||||| |  | | |  |      || |||    ||  ||     ||  ||| |   | |       ||||||| ||      |  |   |  |||  ||  |                      
GAAAAGGATTTGATCAATTTGAAGAGGGAGGCTAAGCTGAAGGGTGGATTCTATGTCGAGCCAGAGCCTAAGCTTATGTTTGTCATCCGTATCCGTGGgtaggacctcgttaaacgaacttcttttgtgctcaattttaattcgcttccccctgagagccattggttcttcagcgaaatctagcgtaaaacacttctaactagtgttattgttgatccag