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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcag

Basic information

species Vitis vinifera
transcript Vv09s0054g00030.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00030.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATGCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCTGTGGgtatgcacttggactatagttatttccattgatacctttactt-tcatatta---------atattctggttctcattcctgttcactctggaactttcag
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GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact-