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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcag

Basic information

species Vitis vinifera
transcript Vv09s0054g00010.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcac-tctggaactttcag
 | || ||| |||| | ||||||||| ||||||||| |||| || || || ||||||||||| ||||||||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||
GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G13580.2 (Arabidopsis thaliana), 5'ss of exon 3
CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactatagttatttcc-------attgatacctt--tactttcatattaatattctggttctcattcctgttcactctggaactttcag
 ||| |||  | || ||  ||||||||||||| ||  |||| || || ||||| ||||||||||| |||||||| || || || || ||||||||||||||      |  |||||   ||| |||       |  |||    |  |||||  |||    | ||||  || |  |  || ||   |     |   ||||
GAAAGGGAATTAATCCAGCTGAAGCGTGAGGCAAAATTGAAAGGAGGCTTTTATGTTGACCCAGAAGCTAAACTGCTTTTCATTATCCGTATCCGTGGgtaatatgatctactattactatctcccaagtataaggatgatgtgttacttctataactgttttctcatttttctatctatttgtttct--atcatcag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactt-tcatatta---------atattctggttctcattcctgttcactctggaactttcag
 ||||||| |||||     ||||  | ||||| ||||||||||||||||| |||||||| |||||| | || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  | | || |           |||||  |     |||      |||   |   ||   |  
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact-

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S163_37V6.1 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactat---agttatttccatt---gatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcag---------------------------------------------------------------------------------
 | |||||  | |||   |||||| | ||||||||||| ||||||||||| || || || |||||  |||||||| | ||| | ||||| ||||||||||  |  |   | |  |   | ||||   || |   |  ||  ||    ||||| | |  |         || |  | | | ||      || ||                                                                                   
GAGAAGGAAATTATTAGTTTGAAGAGGGAGGCTAAGCTCAAGGGTGGATTCTATGTCGAGCCAGAACCTAAACTTATGTTTGTCATTCGAATCCGTGGgttagttcaaagtcatttcaacttatgctcaatttaggaacgattttcatcatactgaattcacttcgaccacttttatactctgcattcctgtcgagtcatatttcagaattccttattcattttgaagtcggaggttccattcgaaaaattctgacttaggtccctttcgattcag

upper sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S243_40V6.1 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCGTGAGGCTAAGCTGAAGGGTGGATTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcacttggactat-agttatttccattgatacctttactt----tcatattaatattc--tggttct-cattcctgttcactctggaac--tttcag---------------------
 |||||||  ||||  | |||||| | ||||||||||||||||||||||| || || || |||||| |||| ||| | ||| | || |||||||||||||| |  || |    |  |  |  ||   |    |  |||| ||    ||    | | |  |  ||||||| ||      |  |   |  |||  ||  |                      
GAAAAGGATTTGATCAATTTGAAGAGGGAGGCTAAGCTGAAGGGTGGATTCTATGTCGAGCCAGAGCCTAAGCTTATGTTTGTCATCCGTATCCGTGGgtaggacctcgttaaacgaacttcttttgtgctcaattttaattcgcttccccctgagagccattggttcttcagcgaaatctagcgtaaaacacttctaactagtgttattgttgatccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719010|gb|FC067630.1|FC067630
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTTG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|33408299|gb|CF213926.1|CF213926
EST:     TATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|351030969|gb|FQ439005.1|FQ439005
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110427908|gb|EC994363.1|EC994363
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110362548|gb|EC926091.1|EC926091
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|71865492|gb|DT014547.1|DT014547
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|77588453|gb|DV223438.1|DV223438
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110686521|gb|EE064257.1|EE064257
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|71870639|gb|DT019694.1|DT019694
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|33408211|gb|CF213838.1|CF213838
EST:     CGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: CGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|71873389|gb|DT022444.1|DT022444
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110362206|gb|EC925723.1|EC925723
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110360464|gb|EC923584.1|EC923584
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|161716946|gb|FC068826.1|FC068826
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110364696|gb|EC928138.1|EC928138
EST:     CCAGAGGCTAAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCCCCCAAAGACGAGAAAGATTTTGCAGCTCTTGGCGTT
genomic: CCAGAGGCT-AAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTT-GCGTT
EST: gi|71873570|gb|DT022625.1|DT022625
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|161719477|gb|FC067687.1|FC067687
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|71873637|gb|DT022692.1|DT022692
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110387232|gb|EC951884.1|EC951884
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|161714799|gb|FC063247.1|FC063247
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
EST: gi|110365131|gb|EC928904.1|EC928904
EST:     TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGG                         TATCAATGCTATGCACCCAAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT
genomic: TTTTACGTTGACCCAGAGGCTAAACTTCTATTTATGATTCGTATCCGTGGgtatgcactt ... gaactttcagTATCAATGCTATGCACCCGAAGACGAGAAAGATTTTGCAGCTCTTGCGTTT