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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatgatgccaatttatgttatgggttgtcgttgagtgtcaaattcttcttatttctttttgtctttggttgttggactggtggaacag

Basic information

species Vitis vinifera
transcript Vv09s0018g01780.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823556|gb|FQ414966.1|FQ414966
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|28965852|gb|CB344885.1|CB344885
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|32271352|gb|CD720511.1|CD720511
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|111125066|gb|EE253677.1|EE253677
EST:     CAGCTTTGGAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCG
genomic: CAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|351024111|gb|FQ423534.1|FQ423534
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|351031377|gb|FQ445402.1|FQ445402
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|34542620|gb|CF510852.1|CF510852
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|349823504|gb|FQ414914.1|FQ414914
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|110372559|gb|EC936737.1|EC936737
EST:     CGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|32248427|gb|CD714246.1|CD714246
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|110387079|gb|EC951719.1|EC951719
EST:     CAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|351015119|gb|FQ444408.1|FQ444408
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|351022170|gb|FQ438755.1|FQ438755
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|110390868|gb|EC955807.1|EC955807
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|26262317|gb|CA813380.1|CA813380
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|29784413|gb|CB345109.2|CB345109
EST:     TCCAAGGGCATCATCGGCAACAGTTTTGAAT                         CATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: TCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|294965939|gb|GW839278.1|GW839278
EST:     CTTCCGCGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGGAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCG
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|32268834|gb|CD717993.1|CD717993
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|110385943|gb|EC950505.1|EC950505
EST:     GGCATCATCGGCAACAGCTTGGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: GGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|29784391|gb|CB345050.2|CB345050
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|32269676|gb|CD718835.1|CD718835
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|110372429|gb|EC936593.1|EC936593
EST:     CTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|110383897|gb|EC948302.1|EC948302
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
EST: gi|110687744|gb|EE065504.1|EE065504
EST:     CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAG                         GATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC
genomic: CTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatg ... ggtggaacagGATGGGAAACCAGATGGAAATTATGATGATACTGATGCAATTCCCACTCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGTCCTCTTCCGTGTCTACAATCACTCCAAGGGCATCATCGGCAACAGCTTTGAAGgtatcaaatgatgccaatttatgttatgggttgtcgttgagtgtcaaattcttcttatttctttttgtctttggttgttggactggtggaacag

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