Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattcattttccctcttatcttgccctttctttttgcatgattgcacatatttggtgaaaattactcctaacttctagaaattgatatctttatag...

Basic information

species Vitis vinifera
transcript Vv09s0018g01710.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G36570.1 (Glycine max), 5'ss of exon 2
AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgatt-cattttccctcttatcttgccctttctttttgcatgattgcac---atatttggtgaaaattactcctaacttctagaaattgatatctttatag
|| ||  | || |||||| ||||  | || |||| |||  ||||||| |||| |||||||||| ||||||||||||| |  |||||||| ||||||||| |||| ||    |  ||  || ||| | |   || ||  ||   | |||  |    || | |  ||||| ||   | |   || |  ||    || | || ||  
AGCGACGTGGAACACAAAACTGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAGCTTGGGAGGATCCTATCCTTGCGGAGTGGCCAGAAGgtattatgatgtagtcattcctatttagtatttactgattcgttaatttaattttatgtatattgaaagtt-tgcttgtgttgtgaaagaccatctatt-at--

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G01300.1 (Glycine max), 5'ss of exon 2
AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattcattttccctcttatcttgccctttctttttgca---tgattgcacatatttggtgaaaatt-actcctaacttctagaaattgatatctttatag
|| ||  | ||||||||||| ||  | || |||| |||| ||||||| |||| |||||||||| ||||||||||||| |  || || || ||||||||| |||||||   | |   ||  |   || |  |||  |||| ||   |  ||      ||||  || | ||| |    |  | | |  ||  |||| | ||     
AGCGATGTCGAGCACAAAGCAGACGCCAAAAAGAAAGCAGTTCCTCGCAAAGCTGCTGGCCAATCTTGGGAGGATCCCATCCTCGCAGAGTGGCCAGAAGgtatgatgactatgttctagt-cattactatttagttttacagatttgttaagttaattttatgtatattgaaagtttgcatgtgaaagatgatctattac---

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G30900.2 (Glycine max), 5'ss of exon 2
AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattcattttccctcttatcttgccctttctttt---tgcatgattgcacatatttggtgaaaattactcctaacttctagaaattga-tatctttatag
|| ||  | ||||||||| | ||  | || |||| |||  ||||||| |||| |||||||||  ||||||||||||| |  ||||| || ||||||||| ||||||| |||| |   | | || |   | || || ||   |   | |||  |  ||  |  ||||||||         |  || | ||    |||  || |  
AGCGACGTGGAGCACAAAACCGATGCCAAAAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCACGCTTGGGAGGATCCTATCCTTGCAGAGTGGCCAGAAGgtatgat-cattatgattatgatgtactcattcctattcagtatttaattttatgtacat--tgaaaatttgcttgtgttgttaaagatcatctattattctt-

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G04500.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattcattt---tccctcttatcttgccctttctttttgc--atgattgcacatatttggtgaaaattactcctaacttctagaaattgatatctttatag-----------------------------------------------------
|||||||  || |||||||| || || || |||||||| ||||||||||||| |||||| ||  ||||||||||||| || ||| | || ||||||||||||| | |    |    |   |||| |  |  || ||  ||||||  ||  |||      |||   | |   || || ||  |  |   |  |   || ||    |                                                     
AGTGAAACCGAACACAAAGCAGAAACTAAAAAGAGAGCCATTCCTCGTAAAGCTGCTGGACAGTCTTGGGAGGATCCTACTCTTTCAGAATGGCCAGAAAgtaagctctgctcgtctttttcttcttctttcccttgattttgctgattgttgttttagtttacgggatggta-tcatagttgttcataggtaggattttagatgttttcttctctgttgttaaaatagatttcttatatctttctaacatttggcag

upper sequence: Vv09s0018g01710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ38822 (Selaginella moellendorffii), 5'ss of exon 1
AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattcattttccctcttatcttgccctttctttttgc--atgattgcacatatttggtgaaaattactcctaacttctagaaattgatatctttatag
 |||| |  ||||| ||| | ||| |||||||| ||||||||||||| ||||  ||||| ||| ||||||||||| | || || |  || ||||||||||||| | | |   |        |       | | ||     |  ||  |||    | | |  || |                                     
GGTGACAACGAGCAGAAATCAGAGGCAAAGAAGCGAGCAATTCCTCGGAAAGCAGCTGGACAATCTTGGGAGGATTCCACTCTCGGAGACTGGCCAGAAAgtaagctgcgaataaaaaaagaaggcaatcgtcctggaaactcatcgttgttgctttgttttgcag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349809484|gb|FQ414374.1|FQ414374
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351039210|gb|FQ457885.1|FQ457885
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349827356|gb|FQ421629.1|FQ421629
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|352795514|gb|FQ480102.1|FQ480102
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349812219|gb|FQ411814.1|FQ411814
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|352791460|gb|FQ481039.1|FQ481039
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351042630|gb|FQ451045.1|FQ451045
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351053774|gb|FQ441540.1|FQ441540
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349828848|gb|FQ419181.1|FQ419181
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349818650|gb|FQ403285.1|FQ403285
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|110728709|gb|EE104516.1|EE104516
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351044071|gb|FQ452744.1|FQ452744
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|110365693|gb|EC929076.1|EC929076
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349808023|gb|FQ402414.1|FQ402414
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351048747|gb|FQ449615.1|FQ449615
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351037484|gb|FQ460683.1|FQ460683
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351047482|gb|FQ454974.1|FQ454974
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|27583752|gb|CB006447.1|CB006447
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|30137999|gb|CB923337.1|CB923337
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351028807|gb|FQ433237.1|FQ433237
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349819475|gb|FQ413359.1|FQ413359
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351053076|gb|FQ456683.1|FQ456683
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351032515|gb|FQ458880.1|FQ458880
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351036139|gb|FQ463984.1|FQ463984
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351036156|gb|FQ464001.1|FQ464001
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|33404798|gb|CF210425.1|CF210425
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349809654|gb|FQ414544.1|FQ414544
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349813656|gb|FQ413890.1|FQ413890
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351053571|gb|FQ462646.1|FQ462646
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351057426|gb|FQ454108.1|FQ454108
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351016422|gb|FQ423849.1|FQ423849
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351037773|gb|FQ464214.1|FQ464214
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349817264|gb|FQ405268.1|FQ405268
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351040618|gb|FQ438162.1|FQ438162
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349824137|gb|FQ417524.1|FQ417524
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349810966|gb|FQ405954.1|FQ405954
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351053617|gb|FQ440126.1|FQ440126
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351043158|gb|FQ451331.1|FQ451331
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351046990|gb|FQ454600.1|FQ454600
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|349819739|gb|FQ402676.1|FQ402676
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGGTG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351054270|gb|FQ450352.1|FQ450352
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351043403|gb|FQ451455.1|FQ451455
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351022180|gb|FQ438765.1|FQ438765
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGTCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
EST: gi|351033445|gb|FQ462096.1|FQ462096
EST:     AGTTGCTGGCCAAACTTGGGAGGATCCAACACTTGCGGATTGGCCAGAAA                         ATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG
genomic: AGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattca ... cattctgcagATGATTATCGTTTATTTTGTGGTGATCTTGGCAATGAGGTGAACGATGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGAAATTGAGCACAAAGCTGAGACAAAGAAGAGAGCAATTCCTCGTAAAGTTGCTGGCCAAACTTGGGAGGATCCAACGCTTGCGGATTGGCCAGAAAgtatgattcattttccctcttatcttgccctttctttttgcatgattgcacatatttggtgaaaattactcctaacttctagaaattgatatctttatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga