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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGATTCTGCCATGAAGAGCCTGCATGAGCATCATTCAAGATATATGGAGAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAGgtatactcttattctctataagagacttgtctattcttttagaaaagagcaagctgagatctatcttgtttgctcggctggattttgatgtttaggtcta...

Basic information

species Vitis vinifera
transcript Vv09s0002g07130.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71865044|gb|DT014099.1|DT014099
EST:     GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAG                         GTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
genomic: GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAGgtatactctt ... taattggcagGTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
EST: gi|71871535|gb|DT020590.1|DT020590
EST:     GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAG                         GTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
genomic: GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAGgtatactctt ... taattggcagGTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
EST: gi|161714120|gb|FC063826.1|FC063826
EST:     GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAG                         GTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCC-GTGGATG
genomic: GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAGgtatactctt ... taattggcagGTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
EST: gi|71862643|gb|DT011698.1|DT011698
EST:     GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAG                         GTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
genomic: GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAGgtatactctt ... taattggcagGTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
EST: gi|71863561|gb|DT012616.1|DT012616
EST:     GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAG                         GTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG
genomic: GAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAGgtatactctt ... taattggcagGTAGCATAACTGCTGATGGAACTGCTTTTTCAAACAACCTTCCTGTGGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAGATTCTGCCATGAAGAGCCTGCATGAGCATCATTCAAGATATATGGAGAAAAGAATAGGTTCAGTTGAAGGGACCTTTGCTGCAAACATGGATAAAGgtatactcttattctctataagagacttgtctattcttttagaaaagagcaagctgagatctatcttgtttgctcggctggattttgatgtttaggtcta

- - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaga