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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattattttctggatcaattttgattatcctttgtatctgctgctaattttataagcaacattatggaaacttgaggaaattgaccgagtgtttttttt...

Basic information

species Vitis vinifera
transcript Vv09s0002g06460.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375149|gb|EC940110.1|EC940110
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|110380681|gb|EC945965.1|EC945965
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|349823577|gb|FQ414987.1|FQ414987
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGAACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|110378701|gb|EC943845.1|EC943845
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|30132619|gb|CB917958.1|CB917958
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTGAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|110418470|gb|EC984627.1|EC984627
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|110378310|gb|EC943434.1|EC943434
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|32267782|gb|CD716941.1|CD716941
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|110382504|gb|EC946801.1|EC946801
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|26266752|gb|CA817815.1|CA817815
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|27586722|gb|CB009417.1|CB009417
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|32271236|gb|CD720395.1|CD720395
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|110695756|gb|EE074133.1|EE074133
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|110392645|gb|EC958212.1|EC958212
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
EST: gi|71877464|gb|DT026519.1|DT026519
EST:     AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGG                         CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG
genomic: AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattatttt ... accactacagCTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTATATGCAGCAACACAATGAAGTGGAACTTTCAGCTCTTGGAATGGgtattattttctggatcaattttgattatcctttgtatctgctgctaattttataagcaacattatggaaacttgaggaaattgaccgagtgtttttttt

- - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaat