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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcaccaaaccccccatcccttcttttaaatttctatatttatatcattcattctgtctataacatgcacaccaaactttggtatataaccactca...

Basic information

species Vitis vinifera
transcript Vv09s0002g05150.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G01560.1 (Glycine max), 5'ss of exon 2
GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtc--accaaaccccccatcccttcttttaaatttctatatttatatcattcattctgtctataacatgc-acaccaaactttggtatataaccactca
|   ||| ||||| ||||  || | |   ||  |  |||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||||   |    || | |   |  | |  ||   || | |||||       ||||| |    || |  |   | |  |||| ||   | ||||  |    
GCTCAGCGTTGAAGGATGAGGAGAATGTTGAACAAGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTTCCTTGGGAgtaagtccttctggcccgctccctcgctttcctaggattatttattttctcatctcattataatcatcatttaagaaagaaaacattttaaaataattat---

upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G03840.1 (Glycine max), 5'ss of exon 2
GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcaccaaacccccca------tcccttcttttaaatttctatatttatatcattcattctgtctataacatgcacaccaaactttggtatataaccactca
  || || |||||  |||| || | ||| ||  |  ||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||        |||  |      ||||  ||| ||| ||  ||  ||| ||| ||| ||  | |  ||  | | || |  ||| |    | | ||  |     
TGGAGGCCTTGAAGAATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCTTGGGAgtaagtactttttgcccttaattaactcccaccttctaatttattaattttttataattaatattttagatg-ctttcagagaaaaataacttgtttatgc-----

upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G43780.1 (Glycine max), 5'ss of exon 2
GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtc--accaaaccccccatcccttcttttaaatttctatatttatatcattcattc---tgtctataacatgcacaccaaactttggta--tataaccactca
| ||||| ||||| ||||| || | | | ||  |  |||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||||||||||   |    |||||  | |||| | ||  | | |||| ||| |||   | |       |||||     | |    | ||||||   |  | ||        
GCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTCCCTTGGGAgtaagtccttctggcccccctcttccttgtcttgtaatactatgtttttattcgttacagaaaagtctagtttttaccgggccaactttttcaactctag-------

upper sequence: Vv09s0002g05150.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G22190.1 (Glycine max), 5'ss of exon 2
GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagt-caccaaaccccccatcccttcttttaaatttctatatttatatcattcattctgtctataacatgcacaccaaactttggtatataaccactca
  || || |||||| ||||||| | ||| ||  |  ||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| |      |||   || ||  | ||  ||||| |   | | ||||||| ||  | | || |   | || |  ||| |    | | ||  |  | |
TGGAGGCGTTGAAAAATGCAGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTCCCTTGGGAgtaagtactttttgcccttaattcccaccttctaattttttattctttatcattaatattttata-agttttcatagaaaaataacttctttatgctgtga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71879162|gb|DT028217.1|DT028217
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGC
EST: gi|71878417|gb|DT027472.1|DT027472
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71880901|gb|DT029956.1|DT029956
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110726819|gb|EE102932.1|EE102932
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTANGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71878862|gb|DT027917.1|DT027917
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71877594|gb|DT026649.1|DT026649
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGA
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGA
EST: gi|110729551|gb|EE105619.1|EE105619
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|30136889|gb|CB922227.1|CB922227
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|33401759|gb|CF207386.1|CF207386
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|33405328|gb|CF210955.1|CF210955
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71880749|gb|DT029804.1|DT029804
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110427469|gb|EC993907.1|EC993907
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110395735|gb|EC961406.1|EC961406
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110421656|gb|EC987956.1|EC987956
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110420130|gb|EC986393.1|EC986393
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110386222|gb|EC950802.1|EC950802
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|351022773|gb|FQ428682.1|FQ428682
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71878173|gb|DT027228.1|DT027228
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110395338|gb|EC960999.1|EC960999
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71878196|gb|DT027251.1|DT027251
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110416250|gb|EC982218.1|EC982218
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110714253|gb|EE090950.1|EE090950
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110731617|gb|EE106184.1|EE106184
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110366465|gb|EC930371.1|EC930371
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCNNNNNNNNNTCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71877762|gb|DT026817.1|DT026817
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110414546|gb|EC980380.1|EC980380
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110382395|gb|EC939366.1|EC939366
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110407064|gb|EC972658.1|EC972658
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71878702|gb|DT027757.1|DT027757
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71875441|gb|DT024496.1|DT024496
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATC
EST: gi|71878031|gb|DT027086.1|DT027086
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71880206|gb|DT029261.1|DT029261
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110378143|gb|EC943262.1|EC943262
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|34417018|gb|CF415772.1|CF415772
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|33405242|gb|CF210869.1|CF210869
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71879193|gb|DT028248.1|DT028248
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71877884|gb|DT026939.1|DT026939
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAA
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAA
EST: gi|71877754|gb|DT026809.1|DT026809
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|30130482|gb|CB915821.1|CB915821
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71879063|gb|DT028118.1|DT028118
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110359952|gb|EC922339.1|EC922339
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|110388793|gb|EC953581.1|EC953581
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|30305349|gb|CB982143.1|CB982143
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|46919760|gb|CN549089.1|CN549089
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71880241|gb|DT029296.1|DT029296
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71862818|gb|DT011873.1|DT011873
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGA
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGA
EST: gi|27586550|gb|CB009245.1|CB009245
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
EST: gi|71877753|gb|DT026808.1|DT026808
EST:     TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGA                         GATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC
genomic: TATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcacc ... ttactttcagGATGTTCATTGAATCTTGCAAGAGGCTGAGGATCAAGAAAAAATCCGAAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAAGCATTGAAAGATGCAGATAGTTCAGAGTATATTCCCATATATGAGGACAAAGATGGGGACTGGATGCTTGTAGGAGATGTTCCTTGGGAgtaagtcaccaaaccccccatcccttcttttaaatttctatatttatatcattcattctgtctataacatgcacaccaaactttggtatataaccactca

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaccaaa