Sequence
atgc intronic sequence ATGC exonic sequenceAGGAACTGCAGGATGATGCTAACCCTAATTTTGTAGAAGAAGTTGTTACATTGTTTTACCGGGATTCAGCTCGACTCGTCCTTAACATAGACCAGGCACTgtaagtgaattcagatgaattatctgcttacgttcaaaatttattcttaataaaagtattgacagtaatgtctgtccagaaaatgtcttcaagatactaatgtcatgttgttgtgggtctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03520.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os01g54050.1 (Oryza sativa), 5'ss of exon 2
AGGAACTGCAGGATGATGCTAACCCTAATTTTGTAGAAGAAGTTGTTACATTGTTTTACCGGGATTCAGCTCGACTCGTCCTTAACATAGACCAGGCACTgtaagtgaattcagatgaattatctgcttacgttcaaaat---ttattcttaataaaagtattgacagtaatgt-----ctgtccagaaaatgtcttcaagat--actaatgtcatgttgttgtgggtctatgcag
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AAGATTTGCAGGATGAAGCTAGTCCTAATTTTGTGGAAGAAGTTGTTACTTTGTTTTTTAAGGACTCGGGCAGGCTAATGTCAAACATTGAGCAAGCTCTgtaagt-aataaaaagtacttgaagttccatatgcagcatgagacattttttctgaaaatatgatctgtagggtttaggctacacaggaaatgttgctaagaggggctgactaactgagatttgaaaacactgcag
upper sequence: Vv09s0002g03520.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G16360.1 (Arabidopsis thaliana), 5'ss of exon 1
AGGAACTGCAGGATGATGCTAACCCTAATTTTGTAGAAGAAGTTGTTACATTGTTTTACCGGGATTCAGCTCGACTCGTCCTTAACATAGACCAGGCACTgtaagtgaattcagatgaattatctgcttacgttcaaaatttattcttaataaaagtattgacagtaatgtctgtccagaaaatgtcttcaagatactaatgtcatgttgttgtgggtctatgcag
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AAGAGCTCCAAGATGATGCAAACCCTAATTTTGTTGAAGAAGTTTCCGCATTATACTTCAAAGATTCAGCTCGGTTAATCAATAACATTGACCAAGCTTTgtgagt--attattttg--ttttcta-ttatatatatattttttttttt-tcagttttctaatcatttttacaatgcag-----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110428639|gb|EC995116.1|EC995116EST: CTCGTCCTTAACATAGACCAGGCACT GGACAAGACCCCTCTTGATTTTTCTAAGTTGGACAGCTACATGCACCAGTT
genomic: CTCGTCCTTAACATAGACCAGGCACTgtaagtgaat ... gtctatgcagGGACAAGACCCCTCTTGATTTTTCTAAGTTGGACAGCTACATGCACCAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAACTGCAGGATGATGCTAACCCTAATTTTGTAGAAGAAGTTGTTACATTGTTTTACCGGGATTCAGCTCGACTCGTCCTTAACATAGACCAGGCACTgtaagtgaattcagatgaattatctgcttacgttcaaaatttattcttaataaaagtattgacagtaatgtctgtccagaaaatgtcttcaagatactaatgtcatgttgttgtgggtctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC