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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCCCTCCCACCTCCACTACCTGATTATGTTGAACCAAGCAAGACCAAGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttcaatgtcacaacccttctaaactttgtcattcttattaagtcatttggcatttctaacttgtgctattattatccttatctctactattattctttgtcccttgttttaatccagttatagttggttggttaatcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03200.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G43000.1 (Glycine max), 5'ss of exon 3
TGTTTCCCTCCCACCTCCACTACCTGATTATGTTGAACCAAGCAAGACCAAGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttcaatgtcacaacccttctaaactttgtcattcttattaagtcatttggcatttctaacttgtgctattattatccttatctctactattattctttgtcccttgttttaatccagttatagttggttggttaatcag
 |||||||| |||||| |||| || |||| ||||||||||||||| |||||||| ||||||||| | |||||  | |||||||||||||| || ||||| |||||| ||   |||    |   ||||  |||||| |||  ||| |||||  | |  | |||   | | ||   | |    |   | | |    |    || | | ||                                      
GGTTTCCCTGCCACCTTCACTGCCAGATTTTGTTGAACCAAGCAACACCAAGATCACAACTCTCCCCAATGGTCTAAAAATAGCATCAGAAACCTCACCAgtatgtgtt---tgtttatagttttctctactttggcatgtttaataagtgttgttacttttactaatagtctaaatgaggtgtgtgttttggttg--gttgtctatcag------------------------------------

upper sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G02390.1 (Glycine max), 5'ss of exon 2
TGTTTCCCTCCCACCTCCACTACCTGATTATGTTGAACCAAGCAAGACCAAGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttcaatgtcacaacccttctaaactttgtcattcttattaagtcatttggcatttctaacttgtgctattattatccttatctctactattattctttgtcccttgttttaatccagttatagttggttggttaatcag
 |||||||| |||||| || | || ||||||||||||||||||||||||||||| ||||||||| | |||||  | ||||| |||||||| || ||||| |||||| ||   ||     |   ||||  || ||| |||  ||| | |     |||  | || ||     |  || ||| |      | | |  | |  ||  |||||  |                                   
GGTTTCCCTGCCACCTTCATTGCCAGATTATGTTGAACCAAGCAAGACCAAGATCACAACTCTCCCCAATGGTCTAAAAATTGCATCAGAAACCTCACCAgtatgtgtt---tgcttatagttttctctaccttggcatgtttaatcaaggtgttgttacttttat----taatagtataaatgaggtgtgtgttttggttggttgtctatcag--------------------------------

upper sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G21380.1 (Glycine max), 5'ss of exon 2
TGTTTCCCTCCCACCTCCACTACCTGATTATGTTGAACCAAGCAAGACCAAGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttcaatgtcacaacccttctaaactttgtcattcttattaagtcatttggcatttctaacttgtgctattattatccttatctctactattattctttgtcccttgttttaatccagttatagttggttggttaatcag
 ||| | ||||||  | |||| || ||||  || |||| ||||||||||||||| ||||| ||||| |||||  ||||||| ||||||||||| || |||||||||   ||   |         ||      |||  ||  ||  |     || |  | | | | | ||    ||    ||| |  || ||| ||| | || ||                                          
CGTTGCTCTCCCAGATTCACTTCCAGATTTCGTCGAACAAAGCAAGACCAAGATCACAACACTCTCCAATGGACTCAAAATTGCATCAGAGACCTCGCCTgtatgtg--catctttcttgtttatcggtgtcttgatatctttcattgacaatgttac-tatatgatttaatttaactctatgccaat-tcttctagttttttt------------------------------------------

upper sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G01720.1 (Glycine max), 5'ss of exon 2
TGTTTCCCTCCCACCTCCACTACCTGATTATGTTGAACCAAGCAAGACCAAGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttcaatgtcacaacccttctaaactttgtcattcttattaagtcatttggcatttctaacttgtgctattattatccttatctctactattattctttgtcccttgttttaatccagttatagttggttggttaatcag
|||| | |||||   | |||| || ||||| || |||| ||||||||||||||| ||||| ||| | |||||  ||||||| || |||||||| || |||||||||     ||||  | |    | |   || | | ||   | | ||      ||  | |   |  ||    |  ||      | |  ||| ||| | || ||||                                        
TGTTGCTCTCCCCGATTCACTTCCAGATTACGTCGAACAAAGCAAGACCAAGATCACAACACTCCCCAATGGACTCAAAATTGCGTCAGAGACCTCTCCTgtatgtgc---atgtttctagttgtttggtctct-tgatatgtttcaatgagaatgttactataagatttaatt--taactctgtcaattcttctagttttttttg----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855705|gb|DT004760.1|DT004760
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|71860092|gb|DT009147.1|DT009147
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCGGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|27580211|gb|CB002906.1|CB002906
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|71860651|gb|DT009706.1|DT009706
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|161719081|gb|FC066045.1|FC066045
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|27579456|gb|CB002151.1|CB002151
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|161719004|gb|FC067624.1|FC067624
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|110729327|gb|EE105483.1|EE105483
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|27580925|gb|CB003620.1|CB003620
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG
EST: gi|30322431|gb|CD005693.1|CD005693
EST:     AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCT                         AATCCTGCAGCCTCTATAGGGTTATATGTTGATTGTGGGTCAATCTATGAG
genomic: AGATAACAACTCTCTCTAATGGCGTCAAAATAGCATCAGAGACATCACCTgtatgtcttc ... ggttaatcagAATCCTGCAGCCTCTATAGGGTTTTATGTTGATTGTGGGTCAATCTATGAG