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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGCTGTTGGAGGAGAATAAGCAGTACATCCAGGACCCACCCACCATTCAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctcttgtggaatccttattcatttgcaatttacctttactaatttggctgggtgctactaatttgaataagcgtgctactgcattgttattgaa...

Basic information

species Vitis vinifera
transcript Vv09s0002g02480.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110412504|gb|EC978254.1|EC978254
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110425757|gb|EC992148.1|EC992148
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|33408295|gb|CF213922.1|CF213922
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110418825|gb|EC985004.1|EC985004
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|30302323|gb|CB979117.1|CB979117
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|34415800|gb|CF414554.1|CF414554
EST:     GAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110688241|gb|EE066569.1|EE066569
EST:     GAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|33408207|gb|CF213834.1|CF213834
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110371455|gb|EC935494.1|EC935494
EST:     GAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|111125141|gb|EE253767.1|EE253767
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAT                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCANGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110366380|gb|EC930263.1|EC930263
EST:     GAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|71875604|gb|DT024659.1|DT024659
EST:     GAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110418586|gb|EC984746.1|EC984746
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110415518|gb|EC981431.1|EC981431
EST:     GCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: GCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|30304091|gb|CB980885.1|CB980885
EST:     CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
EST: gi|110379760|gb|EC944979.1|EC944979
EST:     GAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAG                         TATTCCAGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA
genomic: CAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctct ... ctatttgcagTATTCCGGGCCGTTATGAAGCATTCTGGAAGGAACTTGGTTATATCAAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAGCTGTTGGAGGAGAATAAGCAGTACATCCAGGACCCACCCACCATTCAAAAATGTGACCTATTGGCAAAGCAGTTATTTGCTACTCGTCTGGCCAGgttcttctcttgtggaatccttattcatttgcaatttacctttactaatttggctgggtgctactaatttgaataagcgtgctactgcattgttattgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataag