1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TATTATTTCTGCAATTGAGTTTGATAAATCTGGTGACCACCTTGCTACTGGTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcgttcttttttaacactactggtctttagtttctgtatccaaacttgataggttgccttactgttcttgtttctttcaatattatgatatctttatacactgtaatgtgtag
species | Vitis vinifera |
transcript | Vv09s0002g02470.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGAT CATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCATEST: gi|161716360|gb|FC066871.1|FC066871
genomic: GTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcgttctt ... taatgtgtagCATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCAT
EST: GTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGAT CATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCATEST: gi|161719206|gb|FC066075.1|FC066075
genomic: GTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcgttctt ... taatgtgtagCATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCAT
EST: GTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGAT CATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCAT
genomic: GTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcgttctt ... taatgtgtagCATGGAGGATCAAGAAGGGATCTTGAGAGGATGGACTACCCAATTAGGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTATTTCTGCAATTGAGTTTGATAAATCTGGTGACCACCTTGCTACTGGTGATCGTGGGGGCCGGGTGGTTCTATTTGAGAGGACTGATACAAAGGATgtgcgttcttttttaacactactggtctttagtttctgtatccaaacttgataggttgccttactgttcttgtttctttcaatattatgatatctttatacactgtaatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA