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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCATTCACTCAAGGAAGAAGCAATTCCAATTCCGGACCAGTCTGCTATTACCAAGGACAACGTCAGCATATTGATTGATGGTGTGCTTTATGTGAAGgtattcagcttgaatacggttttttgttggtgtgagtatgtagttggttttaatggggtggtgagttattacctgttgcctgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g01630.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01630.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G14340.1 (Glycine max), 5'ss of exon 2
TGTGCATTCACTCAAGGAAGAAGCAATTCCAATTCCGGACCAGTCTGCTATTACCAAGGACAACGTCAGCATATTGATTGATGGTGTGCTTTATGTGAAGgta---------ttcagcttgaata-cggttttttgttg-gtgtgagtatgtagttggttttaatggggtggt--gagttattacctgttgcctgcag--
||||||||| ||||||||||| || |||   ||||| ||||||  |||||||||||||||||| |||| |||  | || |||||||| |||||||| ||||||         |||    ||  || |  ||   | |||  | |||||   |||| |  || | | |  |||    | || |||       | || ||  
TGTGCATTCGCTCAAGGAAGAGGCTATTAGCATTCCCGACCAGAGTGCTATTACCAAGGACAATGTCACCATCATCATCGATGGTGTCCTTTATGTCAAGgtagaactgtctttctttctgtctatctattcgatattgtatttgagtggttagtggcgttgacttgtttggataaatttcttaaaaagcacttgtagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698343|gb|EE075748.1|EE075748
EST:     TTACCAAGGACAACGTCAGCATATTGATTGATGGTGTGCTTTATGTGAAG                         ATTGTGGATCCTAAATTGGCCTCCTATGGTGTGGAGAATCCTATTTATGCG
genomic: TTACCAAGGACAACGTCAGCATATTGATTGATGGTGTGCTTTATGTGAAGgtattcagct ... ttgcctgcagATTGTGGATCCTAAATTGGCCTCCTATGGTGTGGAGAATCCTATTTATGCG
EST: gi|30128611|gb|CB913950.1|CB913950
EST:     TTACCAAGGACAACGTCAGCATATTGATTGATGGTGTGCTTTATGTGAAG                         ATTGTGGATCCTAAATTGGCCTCCTATGGTGTGGAGAATCCTATTTATGCG
genomic: TTACCAAGGACAACGTCAGCATATTGATTGATGGTGTGCTTTATGTGAAGgtattcagct ... ttgcctgcagATTGTGGATCCTAAATTGGCCTCCTATGGTGTGGAGAATCCTATTTATGCG