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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttcgatcttccccttcgatcctctctctgcttttgattccatttcattgattgtttgctttgcctctcacgtaacgacgaatcttttcctcat...

Basic information

species Vitis vinifera
transcript Vv09s0002g00280.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34543477|gb|CF511709.1|CF511709
EST:     CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: gi|161715609|gb|FC068353.1|FC068353
EST:     TGAGAGCCCCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: TGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: gi|110730040|gb|EE106668.1|EE106668
EST:     CCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: CCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: gi|294966722|gb|GW837741.1|GW837741
EST:     CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: gi|26257010|gb|CA808073.1|CA808073
EST:     CCCCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAACCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: CCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: gi|110728958|gb|EE104982.1|EE104982
EST:     GCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: GCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: gi|110713617|gb|EE089696.1|EE089696
EST:     CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: gi|110726385|gb|EE102119.1|EE102119
EST:     CTGAGAGCCCCCAAATCCTGTGAATCGATCGAG                         GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: CTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttcgatcttccccttcgatcctctctctgcttttgattccatttcattgattgtttgctttgcctctcacgtaacgacgaatcttttcctcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac