1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGAgtgagccttctttttttacatagacattatattatgttgaatatttttttgataggcataatatgttcaatatttgagtatgccgatgtattttatttagatttcttgtgttttgttgggttgatttttgcaaagaaaaaggctttatcatattgttataatctataggttttgttgtttatgtatgcag
species | Vitis vinifera |
transcript | Vv08s0217g00020.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGA GCAAACTGGCAATATGTACAAGAACGTTAAGAAGAAGATCGAGAGGGGTGTEST: gi|22007317|gb|BQ792351.1|BQ792351
genomic: AAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGAgtgagccttc ... atgtatgcagGCAAACTGGCAATATGTACAAGAACGTTAAGAAGAAGATTGAGAGGGGTGT
EST: AAGGCAATGA-TGTTGAC-TCTGCGAGAAAGGCGA-TCATTCATTAGAGA GCAAGCTGTCAATATGTACAAGAACG-TAAGAAGAAGATCGAGAGGGGTG-EST: gi|329112381|gb|JG391849.1|JG391849
genomic: AAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGAgtgagccttc ... atgtatgcagGCAAACTGGCAATATGTACAAGAACGTTAAGAAGAAGATTGAGAGGGGTGT
EST: GGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGA GCAAACTGGCAATATGTACAAGAACG
genomic: GGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGAgtgagccttc ... atgtatgcagGCAAACTGGCAATATGTACAAGAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCTTTGCAGTTAGTCTTGTCGGAATGCAAGCCAAAGGCAAAGATTGTTGACATCTGCGAGAAAGGCGATTCATTCATTAGAGAgtgagccttctttttttacatagacattatattatgttgaatatttttttgataggcataatatgttcaatatttgagtatgccgatgtattttatttagatttcttgtgttttgttgggttgatttttgcaaagaaaaaggctttatcatattgttataatctataggttttgttgtttatgtatgcag
- - - - - - - - - - - - - - - - - - - GCAAAG