Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGAGTGGTATTGGAGGTATTGGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtattatttttatttttatttttatttttttattatttgtttgctcgtattaaattcaattgtagatatctatttcatctttggatgttatgtga...

Basic information

species Vitis vinifera
transcript Vv08s0105g00440.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372028|gb|EC936170.1|EC936170
EST:     GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCGGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|37185096|gb|CF604449.1|CF604449
EST:     GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|351022500|gb|FQ447022.1|FQ447022
EST:     GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|110424174|gb|EC990530.1|EC990530
EST:     GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|22012759|gb|BQ797793.1|BQ797793
EST:     GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|351024908|gb|FQ433325.1|FQ433325
EST:     GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|110702346|gb|EE080958.1|EE080958
EST:     GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCGGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|27580321|gb|CB003016.1|CB003016
EST:     GTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
EST: gi|27578480|gb|CB001175.1|CB001175
EST:     GTCAATATTAATTTCTGTTCCTCTTGTTCCTACAG                         AGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT
genomic: GTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtatt ... ctttttgcagAGGAAATGCAGTAACAATGAAAAATATGCTGGAGAGTCAGTTTCCTGGGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGAGAGTGGTATTGGAGGTATTGGCTTCGGCAACACCGTCAATATTAATTTCTGTTCCTCTTGTTCCTACAGgttttgtattatttttatttttatttttatttttttattatttgtttgctcgtattaaattcaattgtagatatctatttcatctttggatgttatgtga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattcaa