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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCAAGCGCTAGTTGCTGCAGCTTCTGCTTATGGATATACTCTTTTTGAGCGCACATCTGGCCATATTGTGATTGATGTCAATGGCGAGAAACTAAGgtagaataacctcttacttaatactgtgcatttttggtacattctccaactatccttgttttttataacttggttgctgctctagaattgaatatttggataataaaaataatataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttctatgtgcaatttag

Basic information

species Vitis vinifera
transcript Vv08s0058g01400.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os03g21680.3 (Oryza sativa), 5'ss of exon 3
ATGAGCAAGCGCTAGTTGCTGCAGCTTCTGCTTATGGATATACTCTTTTTGAGCGCACATCTGGCCATATTGTGATTGATGTCAATGGCGAGAAACTAAGgtagaataacctcttacttaatactgtgcatttttggtacattctccaactatccttgttttttataacttggttgctgctctagaattgaatatttggataataaaaataatataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttctatgtgcaatttag
||||||| ||  ||||  ||||||||||||||||||||||||| ||| | ||  | ||| ||||||| |||||  |||||||  | || |||||  ||||||| |   ||  | |||||  | ||   |  |      |||||  |    || | ||   ||| ||     | || ||  |    || || || |||   |  | | |||  | |  |   |  | |  |  ||||  ||        ||                                    
ATGAGCAGGCCTTAGTAACTGCAGCTTCTGCTTATGGATATACGCTTGTGGAAAGGACAACTGGCCACATTGTTGTTGATGTTCAGGGGGAGAAGATAAGgtatat--actgcatacttttttctcgacgata-----acatttcctg--taccatt-catttcatcttcagtttactatt----aaatgcattttttactgttgagaattttctgtctgttatt-taatatttaattttactgtcataacag---------------------------------

upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G44550.1 (Glycine max), 5'ss of exon 4
ATGAGCAAGCGCTAGTTGCTGCAGCTTCTGCTTATGGATATACTCTTTTTGAGCGCACATCTGGCCATATTGTGATTGATGTCAATGGCGAGAAACTAAGgtaga--ataacctcttacttaatactgtgcatttttggtacatt-ctccaactatccttgttttttata-----acttggttgctgctctagaattgaatatttggataataaaaat-aatataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttctatgtgcaatttag
|||| ||||| |||||| ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| || |||||||| |||||||   | || || |  |       |   | || |  ||| ||  |  ||| ||  ||       | |     || |  ||  |    | | |||   || ||| ||| |  |  | | | |  ||  |  |||||  | |||| |  | | |  | |  | ||| |||||||||| |||  |||  || |||
ATGAACAAGCTCTAGTTTCTGCAGCCTCTGCATATGGATATACTCTTTTTGAACGCACATCTGGACATATTGTTATTGACGTCAACGGTGAGAAACTCAGgtagattgtgacttccttttggtgggggactacttgttttactttgttttaacaatgttttacacacacacacacacatatttaataaaattgtattatgtacttgaatattctacttcagtgttgcactttgtatgtaacctaaa-tcatatctagattattaaataacttcattatctct--gtggtatatag

upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G41040.1 (Glycine max), 5'ss of exon 5
ATGAGCAAGCGCTAGTTGCTGCAGCTTCTGCTTATGGATATACTCTTTTTGAGCGCACATCTGGCCATATTGTGATTGATGTCAATGGCGAGAAACTAAGgtaga--ataacctcttacttaatactgtgcatttttggtacatt-ctccaactatccttgttttttata-acttggttgctgctctagaattgaatatttggataataaaaata-atataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttcta-tgtgcaatttag
|||| ||||| |||||| |||| || ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||||   | || || |  |       |   | || |  ||| ||  |  | | ||   | | |   | | ||    ||  |    | | |||   || ||| ||| |  |  |   | |  ||  |  |||||  | |||| ||   | |  | |  | ||| |||||||| | |||  | |  |      
ATGAACAAGCTCTAGTTTCTGCGGCCTCTGCATATGGATATACTCTTTTTGAACGCACATCTGGACATATTGTTATTGATGTCAACGGTGAGAAACTCAGgtagatagtgacttcgttttggtgggggactacttgttttactttgttttagcaatgtctctctcacacacacacaattaataaaattgtattatgtacttgaatattctacttctgtcttgcactttgtatgtaacctaaa-ttacatctagattattaaataacttcattgtctctggtatatag-----

upper sequence: Vv08s0058g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G34610.1 (Glycine max), 5'ss of exon 2
ATGAGCAAGCGCTAGTTGCTGCAGCTTCTGCTTATGGATATACTCTTTTTGAGCGCACATCTGGCCATATTGTGATTGATGTCAATGGCGAGAAACTAAGgtagaataacctcttacttaatactgtgcatttttggtacattctccaactatccttgttttttataacttggttgctgctctagaattgaatatttggataataaaaataatataccaaatgctatgttgcttaaagttgtgtattcaatgattaattacttcattatttctatgtgcaatttag
|||| ||||| |||||| |||| || ||||  |||||||||||||| |||||||| ||||||||  | ||||| |||||||||||||| |||||||| ||||| ||||   |  |||||  |    |     ||| |||     |  || |    |   |||  ||  | |   | ||  |  ||  ||  || ||| |    |     | |||||        ||| | | ||  ||     |||||| | |       ||| || |||| | | |||| | |||
ATGAACAAGCTCTAGTTTCTGCTGCCTCTGTATATGGATATACTCTATTTGAGCGAACATCTGGAAACATTGTTATTGATGTCAATGGTGAGAAACTCAGgta-aatagtattatacttt-tgtcattgggctttagtatcgaatgaaattgaattatatttacattgcata--tcctaatgcagccttttatgttttg----tgtggcttatata--------tatctagattttagac---tattcagtaa-------cttaatcatttatgtatgcattatag