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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATACAAAAGAAGAGATCTGTGATTTCAAGCTGAAGGGAAGCTGGTTCGATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaaagatcatttcaagacaatattattttaatctaactaattttccccccttttttaaaggatggtttgaatttgaaatcatatcaaagttcttccattcctaacacaacatttgatgttgaatcaatgagtggtgaatgtgaatgcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00870.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110365049|gb|EC928763.1|EC928763
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|26265422|gb|CA816485.1|CA816485
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAGCACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|30134395|gb|CB919733.1|CB919733
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|26263612|gb|CA814675.1|CA814675
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCGCAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|29785915|gb|CB343266.2|CB343266
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110404339|gb|EC969243.1|EC969243
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110420930|gb|EC987217.1|EC987217
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110392163|gb|EC957390.1|EC957390
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|22011529|gb|BQ796563.1|BQ796563
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110368952|gb|EC933091.1|EC933091
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|29785571|gb|CB342715.2|CB342715
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110716737|gb|EE091979.1|EE091979
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|22011435|gb|BQ796469.1|BQ796469
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|26257073|gb|CA808136.1|CA808136
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110408472|gb|EC974108.1|EC974108
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|30134700|gb|CB920038.1|CB920038
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|28963752|gb|CB342785.1|CB342785
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCCCAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|30128344|gb|CB913683.1|CB913683
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAN                         ATGCACAAGAAACAC
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACAC
EST: gi|110409886|gb|EC975560.1|EC975560
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTTTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110410220|gb|EC975898.1|EC975898
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|46911319|gb|CN546694.1|CN546694
EST:     ATAGATCTTGCACTGTTTATGCTGGCAATTTTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|32457213|gb|CD798387.1|CD798387
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|87584146|gb|DY473414.1|DY473414
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|26258010|gb|CA809073.1|CA809073
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|32457613|gb|CD798787.1|CD798787
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|83276375|gb|DV940383.1|DV940383
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|30137985|gb|CB923323.1|CB923323
EST:     TGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: TGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|33405576|gb|CF211203.1|CF211203
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|26267482|gb|CA818545.1|CA818545
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCCCAAGAAGCACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|30126270|gb|CB911609.1|CB911609
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
EST: gi|110413305|gb|EC979084.1|EC979084
EST:     ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAA                         ATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT
genomic: ATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaa ... gtgaatgcagATGCACAAGAAACACAACGTTCAAAGTGTTGTGCTTGGAAAAGACACTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATACAAAAGAAGAGATCTGTGATTTCAAGCTGAAGGGAAGCTGGTTCGATAGATCCTGCACTGTTTATGCTGGCAATTCTAATACGATCATTGCCCAAgtaagatcaaagatcatttcaagacaatattattttaatctaactaattttccccccttttttaaaggatggtttgaatttgaaatcatatcaaagttcttccattcctaacacaacatttgatgttgaatcaatgagtggtgaatgtgaatgcag

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